Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0823
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    30   1.4  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    29   4.3  
At3g49040.1 68416.m05357 F-box family protein contains F-box dom...    28   7.6  
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ...    28   7.6  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    28   7.6  

>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 130 NLQKIHFFNKSIVL*IACDCYRNNPIWRLAL 222
           NL+ +HF   S +  I  D YR +P W LA+
Sbjct: 870 NLEALHFSENSAMTEIISDLYRRDPKWVLAV 900


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 357 HCW*SDSQND*DSIKYRKEQSRKLMEEKTPSASKEYCK 244
           H W +D++ + +  KY   +  K  +EK    SK YC+
Sbjct: 242 HWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQ 279


>At3g49040.1 68416.m05357 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 415

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 82  IMVKYSNYICRNRIR-INLQKIHFFNKSIVL*IACDC 189
           I++ +   +C   +R ++L K+HF+ K  V  + C C
Sbjct: 150 ILLYFPYRVCLKSLRKLHLYKVHFYGKDSVYNLLCGC 186


>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
           contains Pfam profile:PF00046 Homeobox domain and Pfam
           profile:PF00076 RNA recognition motif
          Length = 444

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -1

Query: 335 KMTKIQLNTEKSSPESSWKRKRQAQAKSIVSARKKNEGNANRH 207
           +MT+IQ++ + + P SS  +K +   +S   +RK+++   NRH
Sbjct: 211 QMTQIQIS-DVTEPASSAHKKIEVTQRSSSMSRKRDKPYTNRH 252


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 324 DSIKYRKEQSRKLMEEKTPSASKEYCKRAQKK*R*R*SPYWIVSITVTGYLQDDRFVK 151
           +++K     S +L   + P     YC+R +++ R R S   +  +   G  +DDR VK
Sbjct: 62  NALKLPMSDSFELQPHRRPEIVHVYCRRKRRRRRRRESFLELAILQNEGVERDDRIVK 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,828
Number of Sequences: 28952
Number of extensions: 290160
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)