Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0821
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 312 1e-85
Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical pr... 266 1e-71
AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical... 72 5e-13
Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein... 29 2.8
Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein... 29 2.8
Z81070-10|CAB03004.1| 163|Caenorhabditis elegans Hypothetical p... 29 3.6
AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical ... 28 6.4
AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical ... 28 6.4
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 312 bits (767), Expect = 1e-85
Identities = 143/185 (77%), Positives = 160/185 (86%)
Frame = +1
Query: 52 KPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 231
KPAPQFK AVV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I
Sbjct: 8 KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67
Query: 232 CEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 411
VL ASTDS F+HLAWIN PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68 TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127
Query: 412 FIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKA 591
FIID QNLRQITINDLPVGRSV+ETLRLVQAFQF +KHGEVCPA W PG+ TIKP K
Sbjct: 128 FIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTPGSDTIKPGVKE 187
Query: 592 AQEYF 606
+QEYF
Sbjct: 188 SQEYF 192
>Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical
protein R07E5.2 protein.
Length = 226
Score = 266 bits (652), Expect = 1e-71
Identities = 116/190 (61%), Positives = 151/190 (79%)
Frame = +1
Query: 37 PLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 216
PL P FK TAVV+G+FK IS DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32 PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91
Query: 217 FRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGI 396
FR +G EV+ S DSHF+HLAW+NTPRK GGLG M+IPL++D + +I+ +GVLD+E+G+
Sbjct: 92 FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151
Query: 397 PFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIK 576
+RGLF+ID +R T NDLPVGRSV+ETLR+++AFQF+DKHGEVCPA+W + TIK
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHEDSPTIK 211
Query: 577 PDTKAAQEYF 606
P ++EYF
Sbjct: 212 PGVATSKEYF 221
>AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical
protein Y38C1AA.11 protein.
Length = 231
Score = 71.7 bits (168), Expect = 5e-13
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Frame = +1
Query: 100 KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHL 276
K+ +L +Y G+ +++LF +P DFT VC TE+ + A EFRK ++L S DS TH
Sbjct: 18 KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77
Query: 277 AW---INTPRKQGGLGP-MNIPLISDKSHRISRDYGVLD------EETGIPFRGLFIIDD 426
W IN+ + G + +I+D I + G++D E + R + +
Sbjct: 78 DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGP 137
Query: 427 KQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 573
+ L+ + GR+ E LR+V Q K PANW G I
Sbjct: 138 DKKLKSKILYPATFGRNFVEILRMVDGVQLGTKAPVATPANWIAGDNVI 186
>Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical
protein M106.5 protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = +1
Query: 268 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 447
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 448 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 537
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 318 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 437
HE S K++ + L R G GHS+ T H R +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664
>Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = +1
Query: 268 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 447
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 448 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 537
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = +1
Query: 268 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 447
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 448 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 537
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>Z81070-10|CAB03004.1| 163|Caenorhabditis elegans Hypothetical
protein F26E4.12 protein.
Length = 163
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 82 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 243
V N D+SLSDYKGK V++ + E D ++K G EVL
Sbjct: 9 VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVL 61
>AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical
protein C53C7.1b protein.
Length = 362
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 430 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 564
Q L+ I+ N + VG SV ++ + QF + GE C NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186
>AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical
protein C53C7.1a protein.
Length = 365
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 430 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 564
Q L+ I+ N + VG SV ++ + QF + GE C NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,128
Number of Sequences: 27780
Number of extensions: 289130
Number of successful extensions: 1055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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