Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0817
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 34 0.097
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134... 29 2.7
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 3.6
01_06_0740 + 31603996-31604820,31605080-31605391 29 3.6
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 28 6.3
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 28 6.3
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589... 28 6.3
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 6.3
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 27 8.4
09_06_0239 - 21794691-21795986 27 8.4
05_03_0090 - 8330283-8330831 27 8.4
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 33.9 bits (74), Expect = 0.097
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +1
Query: 379 GP*ATSLLAPTSLPTPTSQVALLEPLPTQHPSCRPCRSHRLHHFPSQLI 525
GP T +APT PTP PLP +H C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>05_07_0344 +
29411767-29411961,29412692-29412741,29413295-29413430,
29413931-29414032,29414153-29414380,29414460-29414544,
29414648-29414730,29414854-29414945,29415048-29415141
Length = 354
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = +3
Query: 276 KTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPV---SYIAPSSYITPNTYIASGPL 446
++PL A Y T L+ + + H P W + Y P P+ YI P
Sbjct: 148 ESPLCAMNPY-GRTKLVIEDMCRDLH---ASDPNWKIILLRYFNPVG-AHPSGYIGEDPC 202
Query: 447 GATTYTTPFVQTVPIASTASLPV 515
G PFVQ V + +L V
Sbjct: 203 GIPNNLMPFVQQVAVGRRPALTV 225
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 406 PTSLPTPTSQVALLEPLPTQHPSCRPCRSH 495
PT P+P+ Q LL P P Q P + H
Sbjct: 438 PTPPPSPSQQPPLLAPQPVQASPTSPAKQH 467
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 530 DQMSCDGK*CSRCDRHGLHEGCCVGSGSKRATCDVGVGSDVGARSDVAHGP 378
D M+CDG+ HG H G + DVG GS AR+ A P
Sbjct: 182 DAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 373 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
H+ P PT+ P+P LL+P P +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +3
Query: 294 STSYVSSTPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 446
STS+ P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 447 GATTYTTPFVQTVPIASTASL 509
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>06_03_1227 +
28557855-28558323,28558426-28558586,28558850-28558929,
28559015-28559150,28559239-28559388,28559717-28559899
Length = 392
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 122 QRRASLTLGLLYTVWLHSFHQEAVCSLSACCVYRSCIILCYFSRRSN 262
+RR L L TV H+ H VC+L CCV R ++ +FS R +
Sbjct: 106 ERRERDFLAELGTVG-HARHPN-VCALLGCCVDRDLYLVFHFSGRGS 150
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 369 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 476
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 351 HFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 470
+F+ + SPQ P AP + Y + P G T+Y +P
Sbjct: 455 NFMAEASPQGPPQAPAPPAQPVDTGYSSYPPYGGTSYGSP 494
>09_06_0239 - 21794691-21795986
Length = 431
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 291 ASTSYVSSTPLISQPIAYSAHFIK 362
A+T+ +STP+++ P+ S +F+K
Sbjct: 242 ATTTPAASTPMVADPVLKSGYFVK 265
>05_03_0090 - 8330283-8330831
Length = 182
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 412 SLPTPTSQVALLEPLPTQH-PSCRPCRSHRLHH 507
SLPTP L PLP +H P+ CR L H
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSH 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,579
Number of Sequences: 37544
Number of extensions: 305718
Number of successful extensions: 1036
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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