BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0817 (587 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 30 1.1 Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical pr... 29 1.9 Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 29 2.4 Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 2.4 Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 2.4 U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 29 2.4 U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 29 2.4 Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 4.3 U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 28 4.3 U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 7.5 U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 7.5 U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 7.5 AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 7.5 AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 27 7.5 Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 27 9.9 >U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical protein F53B3.2 protein. Length = 634 Score = 30.3 bits (65), Expect = 1.1 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 390 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 512 +I PSS I N + P YTT T P++ TA LP Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335 >Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical protein C52E4.5 protein. Length = 590 Score = 29.5 bits (63), Expect = 1.9 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +2 Query: 176 FHQEAVCSLSACCVYRSCIILCYFSRRS 259 F+++A+ L+AC ++ C++ CYFS S Sbjct: 6 FNKQALAILAACFIFLLCVV-CYFSASS 32 >Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical protein K02E2.8a protein. Length = 188 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/56 (25%), Positives = 25/56 (44%) Frame = +3 Query: 354 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAT 521 F+K + P ++ P + P T + + A T T P T P+++T + T Sbjct: 7 FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTTTTTTT 59 >Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical protein M05B5.5a protein. Length = 399 Score = 29.1 bits (62), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474 +TS AP++ P PTS +LE PT P+ Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128 >Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical protein M05B5.5a protein. Length = 399 Score = 29.1 bits (62), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474 +TS AP++ P PTS +LE PT P+ Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128 >U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription factor E12/47 homolog protein. Length = 399 Score = 29.1 bits (62), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474 +TS AP++ P PTS +LE PT P+ Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128 >U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caenorhabditis elegansN2 basic-helix-loop-helix transcription factor E12/47homolog mRNA, complete cds. ). Length = 399 Score = 29.1 bits (62), Expect = 2.4 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474 +TS AP++ P PTS +LE PT P+ Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128 >Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein C06B8.7 protein. Length = 3118 Score = 28.3 bits (60), Expect = 4.3 Identities = 26/85 (30%), Positives = 38/85 (44%) Frame = +3 Query: 294 STSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPF 473 S+SY S S+ S K+RSPQ PVS I + P ++G L +T P Sbjct: 3027 SSSYTSDA---SESTVQSTVVNKRRSPQPPVSPIPRA----PPLRNSNGFLASTNNFQPL 3079 Query: 474 VQTVPIASTASLPVATHLIKKXSAP 548 +P+ S P H ++ +AP Sbjct: 3080 PTDIPMRSD---PELNHFVELHAAP 3101 >U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical protein F56D3.1 protein. Length = 441 Score = 28.3 bits (60), Expect = 4.3 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +3 Query: 417 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVATHLIKKXSAP 548 P T + P ATT T PFVQT P A+ A+LP A + + P Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPAPAVTRAPIQP 157 >U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical protein K06A9.1c protein. Length = 825 Score = 27.5 bits (58), Expect = 7.5 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = +3 Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434 +TY TP AS+S + IS +A + S S +PSS T +T Sbjct: 248 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 304 Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512 SGP G+T P T P S++ P Sbjct: 305 SGPTGSTVTVVPGSSTSPAPSSSPNP 330 >U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical protein K06A9.1a protein. Length = 1032 Score = 27.5 bits (58), Expect = 7.5 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = +3 Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434 +TY TP AS+S + IS +A + S S +PSS T +T Sbjct: 455 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 511 Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512 SGP G+T P T P S++ P Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNP 537 >U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein K06A9.1b protein. Length = 2232 Score = 27.5 bits (58), Expect = 7.5 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = +3 Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434 +TY TP AS+S + IS +A + S S +PSS T +T Sbjct: 455 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 511 Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512 SGP G+T P T P S++ P Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNP 537 >AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical protein H02F09.3 protein. Length = 1275 Score = 27.5 bits (58), Expect = 7.5 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +3 Query: 399 PSSYIT-PNTYIASGPLGATTYTTPFV--QTVPIASTASLPVATHLIKKXSAPV 551 PS+ +T PNT + S P ATT TT TV + + V T ++ S V Sbjct: 346 PSTVVTKPNTVVTSSPTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVV 399 >AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical protein F42G2.5 protein. Length = 374 Score = 27.5 bits (58), Expect = 7.5 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +2 Query: 188 AVCSLSACCVYRSCIILCYFSRRSNHLPR*NSSP-GFDLLRFFDSFNL 328 ++C A + ++C+ILC F R ++ S P F LL+ D L Sbjct: 158 SICQSCASKLAKNCVILCPFCRNETNVSSVASLPKNFALLQAIDQKTL 205 >Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical protein T12G3.1 protein. Length = 693 Score = 27.1 bits (57), Expect = 9.9 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = +3 Query: 414 TPNTYIASGPLGATTYTTPFV----QTVPIASTASLPVATHLIKKXSAPV 551 TPNT A+ L +TT TP V VP+ TA P+ LI PV Sbjct: 520 TPNTEPATTELASTTSATPAVTAPASIVPVTPTA--PIVETLIVPPLPPV 567 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,071,956 Number of Sequences: 27780 Number of extensions: 235616 Number of successful extensions: 740 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 740 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1237082886 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -