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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0817
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    29   2.4  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    29   2.4  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    29   2.4  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 390 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 512
           +I PSS I  N +    P     YTT    T P++ TA LP
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335


>Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical
           protein C52E4.5 protein.
          Length = 590

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 176 FHQEAVCSLSACCVYRSCIILCYFSRRS 259
           F+++A+  L+AC ++  C++ CYFS  S
Sbjct: 6   FNKQALAILAACFIFLLCVV-CYFSASS 32


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 354 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAT 521
           F+K  +   P  ++ P   + P T   +  + A T T P   T P+++T +    T
Sbjct: 7   FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTTTTTTT 59


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = +3

Query: 294  STSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPF 473
            S+SY S     S+    S    K+RSPQ PVS I  +    P    ++G L +T    P 
Sbjct: 3027 SSSYTSDA---SESTVQSTVVNKRRSPQPPVSPIPRA----PPLRNSNGFLASTNNFQPL 3079

Query: 474  VQTVPIASTASLPVATHLIKKXSAP 548
               +P+ S    P   H ++  +AP
Sbjct: 3080 PTDIPMRSD---PELNHFVELHAAP 3101


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 417 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVATHLIKKXSAP 548
           P T   + P  ATT  T PFVQT P A+ A+LP A  + +    P
Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPAPAVTRAPIQP 157


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434
           +TY   TP  AS+S   +   IS     +A  +   S     S    +PSS  T +T   
Sbjct: 248 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 304

Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512
           SGP G+T    P   T P  S++  P
Sbjct: 305 SGPTGSTVTVVPGSSTSPAPSSSPNP 330


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434
           +TY   TP  AS+S   +   IS     +A  +   S     S    +PSS  T +T   
Sbjct: 455 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 511

Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512
           SGP G+T    P   T P  S++  P
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNP 537


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434
           +TY   TP  AS+S   +   IS     +A  +   S     S    +PSS  T +T   
Sbjct: 455 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 511

Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512
           SGP G+T    P   T P  S++  P
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNP 537


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 399 PSSYIT-PNTYIASGPLGATTYTTPFV--QTVPIASTASLPVATHLIKKXSAPV 551
           PS+ +T PNT + S P  ATT TT      TV    +  + V T ++   S  V
Sbjct: 346 PSTVVTKPNTVVTSSPTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVV 399


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 188 AVCSLSACCVYRSCIILCYFSRRSNHLPR*NSSP-GFDLLRFFDSFNL 328
           ++C   A  + ++C+ILC F R   ++    S P  F LL+  D   L
Sbjct: 158 SICQSCASKLAKNCVILCPFCRNETNVSSVASLPKNFALLQAIDQKTL 205


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +3

Query: 414 TPNTYIASGPLGATTYTTPFV----QTVPIASTASLPVATHLIKKXSAPV 551
           TPNT  A+  L +TT  TP V      VP+  TA  P+   LI     PV
Sbjct: 520 TPNTEPATTELASTTSATPAVTAPASIVPVTPTA--PIVETLIVPPLPPV 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,071,956
Number of Sequences: 27780
Number of extensions: 235616
Number of successful extensions: 740
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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