Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0817
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 2.4
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 29 2.4
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 29 2.4
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 4.3
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 28 4.3
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 7.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 7.5
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 7.5
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 27 7.5
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 27 9.9
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 390 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 512
+I PSS I N + P YTT T P++ TA LP
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335
>Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical
protein C52E4.5 protein.
Length = 590
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 176 FHQEAVCSLSACCVYRSCIILCYFSRRS 259
F+++A+ L+AC ++ C++ CYFS S
Sbjct: 6 FNKQALAILAACFIFLLCVV-CYFSASS 32
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +3
Query: 354 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAT 521
F+K + P ++ P + P T + + A T T P T P+++T + T
Sbjct: 7 FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTTTTTTT 59
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 388 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 474
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 4.3
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +3
Query: 294 STSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPF 473
S+SY S S+ S K+RSPQ PVS I + P ++G L +T P
Sbjct: 3027 SSSYTSDA---SESTVQSTVVNKRRSPQPPVSPIPRA----PPLRNSNGFLASTNNFQPL 3079
Query: 474 VQTVPIASTASLPVATHLIKKXSAP 548
+P+ S P H ++ +AP
Sbjct: 3080 PTDIPMRSD---PELNHFVELHAAP 3101
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 417 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVATHLIKKXSAP 548
P T + P ATT T PFVQT P A+ A+LP A + + P
Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPAPAVTRAPIQP 157
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 7.5
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434
+TY TP AS+S + IS +A + S S +PSS T +T
Sbjct: 248 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 304
Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512
SGP G+T P T P S++ P
Sbjct: 305 SGPTGSTVTVVPGSSTSPAPSSSPNP 330
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.5 bits (58), Expect = 7.5
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434
+TY TP AS+S + IS +A + S S +PSS T +T
Sbjct: 455 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 511
Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512
SGP G+T P T P S++ P
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNP 537
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 7.5
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY--IAPSSYITPNTYIA 434
+TY TP AS+S + IS +A + S S +PSS T +T
Sbjct: 455 STYGSSTPS-ASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMST--V 511
Query: 435 SGPLGATTYTTPFVQTVPIASTASLP 512
SGP G+T P T P S++ P
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNP 537
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 399 PSSYIT-PNTYIASGPLGATTYTTPFV--QTVPIASTASLPVATHLIKKXSAPV 551
PS+ +T PNT + S P ATT TT TV + + V T ++ S V
Sbjct: 346 PSTVVTKPNTVVTSSPTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVV 399
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 188 AVCSLSACCVYRSCIILCYFSRRSNHLPR*NSSP-GFDLLRFFDSFNL 328
++C A + ++C+ILC F R ++ S P F LL+ D L
Sbjct: 158 SICQSCASKLAKNCVILCPFCRNETNVSSVASLPKNFALLQAIDQKTL 205
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 414 TPNTYIASGPLGATTYTTPFV----QTVPIASTASLPVATHLIKKXSAPV 551
TPNT A+ L +TT TP V VP+ TA P+ LI PV
Sbjct: 520 TPNTEPATTELASTTSATPAVTAPASIVPVTPTA--PIVETLIVPPLPPV 567
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,071,956
Number of Sequences: 27780
Number of extensions: 235616
Number of successful extensions: 740
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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