Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0817
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    31   0.57 
At2g38440.1 68415.m04721 expressed protein                             29   3.0  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    28   4.0  
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    28   4.0  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    27   7.0  
At2g40070.1 68415.m04923 expressed protein                             27   7.0  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    27   7.0  

>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 282 PLLASTSY--VSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGAT 455
           P+L   S+  +S T + +  IA     IK+ +P W  + IA +   T N Y ++G + + 
Sbjct: 604 PILTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISA 663

Query: 456 TY 461
            Y
Sbjct: 664 EY 665


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 503 CSRCDRHGLHEGCCVGSGSKRATCDV 426
           CS+CD H  HEG    SG   AT D+
Sbjct: 808 CSKCDDHISHEGFHDLSGLDNATTDI 833


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 399 PSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVATHLIKKXSAP 548
           PSS ++P+T   +G LG+ +  TP     P AS ++ P A+  +   + P
Sbjct: 655 PSSLVSPSTSPPAGHLGSPS-DTPSSVVTPSASPSTSPSASPSVSPSAFP 703



 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 399 PSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVATHLIKKXSAP 548
           PSS ++P+T + +G LGA    TP +    + S ++ P A HL      P
Sbjct: 611 PSSVVSPSTSLPAGQLGAPP-ATPSM----VVSPSTSPPAGHLGSPSDTP 655


>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
 Frame = +3

Query: 276 KTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPV---SYIAPSSYITPNTYIASGPL 446
           ++P+ A+  Y   T L  + I    H   +   +W +    Y  P     P+ YI   PL
Sbjct: 144 ESPISATNPY-GRTKLFIEEICRDVH---RSDSEWKIILLRYFNPVG-AHPSGYIGEDPL 198

Query: 447 GATTYTTPFVQTVPIASTASLPV 515
           G      P+VQ V +     L V
Sbjct: 199 GVPNNLMPYVQQVAVGRRPHLTV 221


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +2

Query: 170 HSFHQEAVCSLSACCVYRSCIILCYFSRRSNHLPR*NSSPGFDLLRFFDS 319
           +SFH++ V + S   V   C++  YF      LP+  ++PGF + + +D+
Sbjct: 195 YSFHRDEVPAES---VMHRCVV--YFVPAHKQLPKRKNNPGFIVRKVYDT 239


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 360 KKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAT 521
           K   P  P S    SS   P+   +   + ATT  TP  ++  ++S+   P A+
Sbjct: 201 KSSRPSTPTSRATVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSSRLTPTAS 254


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 191 VCSLSACCVYRSCIILCYFSRRSNHLPR*NSSPGFD 298
           +CS     V++SCI L    R S HL R + +P F+
Sbjct: 320 ICSPCDFVVHQSCITLPRVIRISRHLHRISFTPSFE 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,514
Number of Sequences: 28952
Number of extensions: 219527
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)