Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0816
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01985.1 68417.m00265 expressed protein                             30   2.0  
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    29   4.5  

>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 473 AVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 375
           AVGG    ++ G GRG     G A GG+  G G
Sbjct: 301 AVGGGGGGSVGGGGRGSGGASGGASGGASGGAG 333



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 473 AVGGDAVSAISGVGRGDSVRCGDAIGGSDQG 381
           AVGG    ++ G GRG     G A GG+  G
Sbjct: 369 AVGGGGGGSVGGGGRGSGGASGGASGGASGG 399


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
            protein contains Pfam profile: PF03130 PBS lyase
            HEAT-like repeat
          Length = 1116

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 611  NALVIDNVVPGVGRV-W*HRSTVGISRI-PGWRLVLPFLQKLFSDLLLND 754
            NA+  DN V  VG++   HR ++  S++ P W   LP    +    +++D
Sbjct: 984  NAMAYDNAVSAVGKICQFHRDSIDSSQVLPAWLNCLPISNDVLEAKVVHD 1033


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,410,302
Number of Sequences: 28952
Number of extensions: 163564
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)