Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0813
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0292 - 16436918-16439233                                         29   3.3  
04_04_1205 + 31723127-31723266,31724239-31724363,31724454-317245...    29   4.4  
03_05_0860 + 28345120-28345266,28345376-28345424,28345519-283456...    29   5.8  

>09_04_0292 - 16436918-16439233
          Length = 771

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -1

Query: 806 TSTCNAGQLNNALGKIVTAVIEYLINLLTLIMGFLFYF*CF------DGWTSSQLTWC*V 645
           TS C  G+    + +   A + Y   + T++ G+  Y   F      DG  +SQL  C V
Sbjct: 552 TSICCYGESKFDMAQ-ADAELRYHYEVATVLSGYCSYLVAFAPDLIPDGTYTSQLLSCRV 610

Query: 644 VTGAHRYL*CKCAT 603
           +  AH YL  +C T
Sbjct: 611 LKDAHAYL-AECRT 623


>04_04_1205 +
           31723127-31723266,31724239-31724363,31724454-31724500,
           31724601-31724636,31724771-31724895,31725013-31725079,
           31725164-31725226,31725354-31725423,31725522-31725622,
           31725978-31726160
          Length = 318

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = -1

Query: 119 FKNRILIEISRVKKQKTIIVF-ISLPMLIA 33
           F+ RILI++SR+     ++ F IS+P++IA
Sbjct: 48  FRPRILIDVSRINMATNVLGFNISMPIMIA 77


>03_05_0860 +
           28345120-28345266,28345376-28345424,28345519-28345641,
           28345759-28345931
          Length = 163

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 607 PPTLRY-KF*GLKYSGCP 557
           PP LRY K+ G+ YSGCP
Sbjct: 67  PPLLRYGKYCGILYSGCP 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,273,131
Number of Sequences: 37544
Number of extensions: 332278
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)