Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0813
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    24   1.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    24   1.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    24   1.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    24   1.4  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   5.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.7  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 86  NSLSNNYNYNNNYNNYNKHNYNKLYY 111


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 319 NSLSNNYNYNNNYNNYNKHNYNKLYY 344


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 129 NSVVQK*NIN*NFTR*KTKNYNRLYF 52
           NS+    N N N+      NYN+LY+
Sbjct: 319 NSLSNNYNYNNNYNNYNKHNYNKLYY 344


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 108 NIN*NFTR*KTKNYNRLYF 52
           N N N+      NYN+LY+
Sbjct: 93  NYNNNYNNYNKHNYNKLYY 111


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 72  NYNRLYFPAYADSLERLYQRY 10
           NYN  Y   Y ++ ++LY+ Y
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 72  NYNRLYFPAYADSLERLYQRY 10
           NYN  Y   Y ++ ++LY+ Y
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNY 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,880
Number of Sequences: 438
Number of extensions: 3538
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)