Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0811
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    32   0.072
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   1.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   4.7  

>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 208 NRNALLLHGRNRQGGGTYPCGLTRGPTTSNYNTMSIVFKGFLYG 77
           N   ++LHG N Q      CGL    T+SN N   I F  FL G
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFM-VTSSNTNKWKIAFASFLLG 148


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 160 YHHPAYFCREAVMRFGLKGGAAVVTIIETLELISQGG 270
           +  P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121



 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 469 YHHPAYFCREAVMRFGLKGGAAVVTILETSELISQDG 579
           +  P+ F  E V+   L GG AVV +  T E I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 654 GGRDHSPPGVKWLLKPIDIYN 592
           GG  H P  V WLL+P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,468
Number of Sequences: 5004
Number of extensions: 57306
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)