Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0810
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   1.5  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   3.5  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    25   3.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   4.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   6.1  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    24   6.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   6.1  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   8.1  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    23   8.1  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 32  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 175
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 51  IHTPPPSGVLTCTTINITKTW 113
           I+ PP + ++TC+T  +   W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 56  YTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ 166
           Y PT  R       Y+     L+KN   K HL +  Q
Sbjct: 173 YNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQ 209


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 66  PSGVLTCTTINITKTWAVLSKTPSARST*SNMNKRRSNGDLLD 194
           P+ ++    +NIT+ +  L  + +A+   +   K   NGD+LD
Sbjct: 569 PNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKISKNGDILD 611


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 45  RIIHTPPPSGVLTCTTINITKTW 113
           +++ TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 53  SYTPTIGRTYVY--DNKYYKNLGCLIKNAKR 139
           SY   +GRTY++  D++  KN   L+   K+
Sbjct: 289 SYCSNVGRTYLFDPDSEQQKNYSFLVALQKK 319


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 215 SSATHVVV*KIPIASPLVHVRLGAS 141
           SS ++ V   +P+ +P VH + G+S
Sbjct: 63  SSTSNEVRKSVPVGNPTVHTKTGSS 87


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  TPPPSGVLTCTTINITKT 110
           TP P+G  + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 74  RTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ---EEKQ 178
           R  +++ KY K    LIK A  ++ + E  Q   EE+Q
Sbjct: 303 RQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQ 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,572
Number of Sequences: 5004
Number of extensions: 27323
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)