Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0810
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 30 0.44
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302... 27 2.3
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 27 2.3
03_03_0074 + 14278725-14278934,14279045-14279806 27 2.3
03_03_0073 - 14269472-14270233,14270344-14270526 27 2.3
12_01_0376 - 2934115-2934603 27 4.1
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 27 4.1
11_01_0461 + 3569700-3572373,3572477-3572847 26 7.2
10_01_0047 - 656357-656766,657061-657226,657333-657515,657628-65... 26 7.2
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531... 26 7.2
02_05_0554 + 29929860-29929959,29932944-29934220 26 7.2
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571... 25 9.5
06_03_1470 + 30371391-30372353 25 9.5
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 25 9.5
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 108 TWAVLSKTPSARST*SNMNKRRSNGDLLDNYMGCRRSLFRTRPKPKTYPFLRNSQCGNPF 287
TW + TP+A + SN +K R + + R RP+ T+ + NSQC P
Sbjct: 395 TWKPKNDTPTAGGSGSNNHKDRKRKP--EELVATTSPSSRQRPRVNTFDKIMNSQC--PH 450
Query: 288 H 290
H
Sbjct: 451 H 451
>12_01_0386 +
3023431-3023522,3023951-3024097,3024227-3024308,
3024801-3024842,3024930-3024989,3025430-3027109,
3027239-3027340,3027461-3027604,3027704-3027829,
3027933-3028100
Length = 880
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 101 YKNLGCLIKNAKRKKHLVEHEQEEKQWGSSRQLHGLPKI 217
YK L C + N + + Q SR LHGLP I
Sbjct: 152 YKKLCCQLNNRSSMVASASAKNDLSQKVQSRSLHGLPSI 190
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 68 IGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWGSSRQLHGLPK 214
+GR+ + ++ LIK K + +E EQEEK+ G R L K
Sbjct: 273 LGRSESRSQQRFEKAKELIKKLKARVQDLEKEQEEKENGVIRDLRSAKK 321
>03_03_0074 + 14278725-14278934,14279045-14279806
Length = 323
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 2 GFRNSFVIKKPINMPNYSYTPTIGRTYV----YDNKYYKNL 112
GF N + P N P S PT+ + V +DN+YYKN+
Sbjct: 219 GFANFLKQRCPAN-PTSSNDPTVNQDAVTPNAFDNQYYKNV 258
>03_03_0073 - 14269472-14270233,14270344-14270526
Length = 314
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 2 GFRNSFVIKKPINMPNYSYTPTIGRTYV----YDNKYYKNL 112
GF N + P N P S PT+ + V +DN+YYKN+
Sbjct: 210 GFANFLKQRCPAN-PTSSNDPTVNQDAVTPNAFDNQYYKNV 249
>12_01_0376 - 2934115-2934603
Length = 162
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 111 WAVLSKTPSARST*SNMNKRRSNGDLLDNYMGC 209
+A L TPSAR ++RR G L +GC
Sbjct: 120 YAYLQMTPSARDDPGRRHRRRWRGPLCRLLLGC 152
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 252 PFLRNSQCGNPFHEIYR 302
P+LRN++ G P H +Y+
Sbjct: 2181 PYLRNAELGQPIHLLYK 2197
>11_01_0461 + 3569700-3572373,3572477-3572847
Length = 1014
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 62 PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLV 154
PTI ++Y N+ L I NAK+ +HLV
Sbjct: 488 PTIREIWLYSNRLDGPLPIEIGNAKQLEHLV 518
>10_01_0047 -
656357-656766,657061-657226,657333-657515,657628-657849
Length = 326
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 68 IGRTYVYDNKYYKNL 112
I YV+DN+YY+NL
Sbjct: 243 ITSAYVFDNRYYQNL 257
>05_04_0375 +
20750170-20751011,20751707-20751865,20752894-20753146,
20753287-20753316
Length = 427
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 269 RIS*KRVSFWFWPGPKKGSSATHVVV*KIPIASPLVHVRLGASCA 135
R+S +R +W+W P +S + ++ +A L V L SCA
Sbjct: 28 RVSAQRRRWWWWAAPLPSASGASSLE-RVALAFFLASVALVLSCA 71
>02_05_0554 + 29929860-29929959,29932944-29934220
Length = 458
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 63 PPSGVLTCTTINITKTWAVLSKTPSARST 149
P + VLT I+ A L+KTPSAR+T
Sbjct: 64 PFTAVLTHDDARISSLAARLAKTPSARAT 92
>09_03_0166 +
12956794-12956832,12956936-12956977,12957084-12957149,
12957237-12957350,12957435-12957515,12957613-12957690,
12958702-12958784,12959645-12959726,12959801-12959901,
12960016-12960055,12960162-12960221,12960302-12960348,
12960437-12960575,12960716-12960931,12961010-12961344,
12961525-12961596,12962449-12962589,12962680-12962716,
12962837-12963256
Length = 730
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 94 IVVHVSTPDGGGV*IIRH-IYRFFYYKT 14
IV VS G G+ + R + RFFYY+T
Sbjct: 562 IVPRVSQTVGAGITVPRRRLLRFFYYRT 589
>06_03_1470 + 30371391-30372353
Length = 320
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -2
Query: 254 RVSFWFWPGPKKGSSATHVVV 192
+ +FWFW P+ + H V+
Sbjct: 227 KTAFWFWMTPQSPKPSCHAVI 247
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/40 (22%), Positives = 18/40 (45%)
Frame = +2
Query: 101 YKNLGCLIKNAKRKKHLVEHEQEEKQWGSSRQLHGLPKIP 220
+K L C + H+ + WG+ R + +P++P
Sbjct: 44 HKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVP 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,482
Number of Sequences: 37544
Number of extensions: 172557
Number of successful extensions: 413
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -