Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0810
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    29   0.52 
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    27   2.1  
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    26   4.8  
AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical ...    26   4.8  
Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z68314-6|CAA92657.2|  446|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    26   6.4  
Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical p...    25   8.4  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    25   8.4  
AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    25   8.4  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    25   8.4  

>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 233 PGPKKGSSATHVVV*KIPIASPLVHVRLGASCAWRF**DSPSFCN 99
           PG     S T  V  + PI S  V  R G SC +     SP FCN
Sbjct: 632 PGLVVEGSVTAEVSSECPIGSVEVDPRFGTSCRYSLQCPSPYFCN 676


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 32  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVE 157
           PI+ P ++  P + ++ V +   YKN  CL K +K  + LV+
Sbjct: 2   PISEPTWAELPFLFKSAVVELLPYKNRCCLRKCSKSDQFLVD 43


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +2

Query: 101 YKNLGCLIKNAKRKKHLVEHE---QEEKQWGSSRQLHGLPKIP 220
           Y+ +  ++ + KRK H+V HE   +++K++ +  ++ G+P  P
Sbjct: 658 YRKISSVVISKKRKNHIVPHEKIRKKQKRYRTPERI-GIPNRP 699


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
           protein T28B8.3a protein.
          Length = 1838

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 182 GSSRQLHGLPKIPF*DPAKTKNLPFFKKFAVWKPV 286
           G S  LH L  I    P KT++  F + F+ W P+
Sbjct: 747 GVSTLLHNLLNITTNFPVKTEHNQFSEPFSEWNPI 781


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 243  KTYP-FLRNSQCGNPFHEIYRQ 305
            KT P F+R  QC N F  +YRQ
Sbjct: 2660 KTPPQFMREPQCSNIFFRMYRQ 2681


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 243  KTYP-FLRNSQCGNPFHEIYRQ 305
            KT P F+R  QC N F  +YRQ
Sbjct: 2660 KTPPQFMREPQCSNIFFRMYRQ 2681


>AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical
           protein T08D2.2 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 32  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVE 157
           PI+ P ++  P   ++ V +   YKN  CL K +K  + LV+
Sbjct: 2   PISEPTWAEFPFFFKSAVVELLPYKNRCCLRKCSKPNQFLVD 43


>Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical
           protein C07A4.1 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 66  PSGVLTCTTINITKTWAVLSKTPSARST*SNMNKRRSNGDLLDNYMGCRRSLFRTRPKPK 245
           P+G+L   +I    T  +L +T S  S  S++    S   L+ ++   R  LFRT   P 
Sbjct: 28  PAGLLDTQSIQSLDTCPLLLQTASLPSL-SHIGLPHS---LVCSFAHFR--LFRTLLSPF 81

Query: 246 TYPFL-RNSQCGNPFH 290
           +YPFL R S C    H
Sbjct: 82  SYPFLSRQSFCPIEIH 97


>Z68314-6|CAA92657.2|  446|Caenorhabditis elegans Hypothetical
           protein F07H5.9a protein.
          Length = 446

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 56  YTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWGSS 190
           + P    T  YD+ +  N+ C+    +   ++ +   E K W SS
Sbjct: 151 FVPIPVHTVDYDSDHIGNMDCICPRREWLWNIAQQSDEMKNWRSS 195


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 29  KPINMPNYSY-TPTIGRTYV 85
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 29  KPINMPNYSY-TPTIGRTYV 85
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical
           protein C54D10.12 protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 125 KNAKRKKHLVEHEQEEKQWGSSRQL 199
           KN  R+K   E EQEE+Q+  S +L
Sbjct: 59  KNEAREKRKREEEQEERQFKESLKL 83


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 125 KNAKRKKHLVEHEQEEKQWGSSRQL 199
           KN  R+K   E EQEE+Q+  S +L
Sbjct: 764 KNEAREKRKREEEQEERQFKESLKL 788


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 158 HEQEEKQWGSSRQLHGLPKIPF*DPAKTKNLPFFKKFAVW 277
           HE ++  W +    H + K P  DP    N P  K+  ++
Sbjct: 34  HEAQKMTWNAKVVYHTIDKCPHCDPMIFMNFPKKKQLKLY 73


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 158 HEQEEKQWGSSRQLHGLPKIPF*DPAKTKNLPFFKKFAVW 277
           HE ++  W +    H + K P  DP    N P  K+  ++
Sbjct: 34  HEAQKMTWNAKVVYHTIDKCPHCDPMIFMNFPKKKQLKLY 73


>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 17  FVIKKPINMPNYSYTPTIGRTYVYDNKYY 103
           F+  KPI+ PN+     + R YV  N+ Y
Sbjct: 179 FLAAKPISGPNFDIEAKLFRFYVVVNQQY 207


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 89  DNKYYKNLGCLIKNAKRKKHL 151
           DN Y   L CLI+ ++ K H+
Sbjct: 568 DNTYITGLNCLIEISRNKSHI 588


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,839,275
Number of Sequences: 27780
Number of extensions: 153357
Number of successful extensions: 419
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)