Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0809
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320...    28   8.8  

>05_07_0195 -
           28331445-28331641,28331841-28331934,28332019-28332099,
           28332186-28332234,28332334-28332419,28332513-28332740,
           28332819-28332857,28332958-28333047,28333207-28333269,
           28333371-28333449,28333539-28333585,28333668-28333730,
           28333814-28333864,28333977-28334060,28334162-28334226,
           28334559-28334676,28334775-28334825,28335228-28335314,
           28335633-28335712,28336676-28336793
          Length = 589

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
 Frame = -3

Query: 670 LHI-IMQILNIQTKEKTKPGNHRNVGLK--SKLPSIILLN----IAFDSHLKLHFFCQVC 512
           +H+ ++ +LN+  ++KTKP  H   GL+    +P I+       +  +  +KL  FC V 
Sbjct: 159 VHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVP 218

Query: 511 KENII 497
             NI+
Sbjct: 219 ISNIV 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,685
Number of Sequences: 37544
Number of extensions: 292167
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)