Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0807
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    27   2.1  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   6.5  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +2

Query: 464 QDIRPFGQCNFSDIRPCYNSNDLRLDFGIAGS*ATCMKKLTQRAVNELCS*LNFLKI 634
           QD++  G+ ++S++   Y +    L+  +  S A C+    Q  +NEL S ++ LK+
Sbjct: 547 QDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVS--FQEKINELNSQIDELKL 601


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 178 DEKNRYCQTFELSKTAVNLIAFSSYENLFRLFLLYGIFA 294
           ++  +Y  TF+LSKT V++   +  E +  L L+ GI A
Sbjct: 833 EKGGQYLDTFQLSKTVVSIPMVNFSEAVSNLGLVAGILA 871


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 311 YNCKIFAKIPYNKNNRNKFSYELK 240
           Y C+I  K P N + +  F+Y+L+
Sbjct: 271 YACRIIRKTPLNLSEKKFFAYQLQ 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,782
Number of Sequences: 5004
Number of extensions: 51752
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)