Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0807
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0082 - 20595935-20596039,20596103-20596189,20596468-205965...    28   6.8  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    28   9.0  

>03_05_0082 -
           20595935-20596039,20596103-20596189,20596468-20596586,
           20596686-20596924,20597044-20597100,20597203-20597909,
           20599827-20600192
          Length = 559

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 211 LSKTAVNLIAFSSYENLFRLFLLYGIFAKILQLYFQVIKFSRGIL 345
           L+ T  +++AFS   + F+L L   +   +   YFQ++    G+L
Sbjct: 301 LTWTGFSMLAFSGLPDFFKLSLASAVMLCLETWYFQILVLIAGLL 345


>07_01_0783 +
           6068229-6068503,6069159-6069269,6069806-6070150,
           6071030-6071211,6071331-6071422,6071505-6071835,
           6071960-6072170,6072551-6072665,6073677-6073838,
           6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 298 FLQKSRTTKIIEINSHMN*KQSN*QQFWKVRKSDNTGFSHPLFP*TSHINKLSLWY*KNQ 119
           +L   R ++++ I S    K  N Q+   V  + N    HP+F       KL LWY ++Q
Sbjct: 683 YLLLLRNSQVVSIRSSA--KNRNTQKQLPV--TSNPSSEHPIF--MDSFPKLKLWYRQHQ 736

Query: 118 YCL 110
            CL
Sbjct: 737 ACL 739


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,172
Number of Sequences: 37544
Number of extensions: 266882
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)