Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0807
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51369| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_40677| Best HMM Match : DUF855 (HMM E-Value=2.6)                    29   4.0  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.1  

>SB_51369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 399 SIEVNI*IHR*SRYFCFNTVMCKILGHLDNV 491
           +I V++ IH   R FC   V+C  + HLDNV
Sbjct: 30  TINVDV-IHSSKRLFCSKIVVCNNITHLDNV 59


>SB_40677| Best HMM Match : DUF855 (HMM E-Value=2.6)
          Length = 153

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -2

Query: 460 ITVLKQKYLDHLCI*ILTSMESPYYLSQFNFWVLFFNVTRYPEKT*LLENIIARFLQKSR 281
           I V K+++ DH+ + ++T + + +Y+   +F    FN T++  K     + +  F  +  
Sbjct: 48  IYVSKERFEDHIELLLITEVSNKHYVLIKDFNKFMFNQTKHEHKKHFCMSCLQCFSSERV 107

Query: 280 TTKIIE 263
            T  IE
Sbjct: 108 LTNYIE 113


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 157 EKSKEIKDEKNRYCQTFELSKTAVNLIAFSSYE 255
           EK+KE++DEK R     ELS+  V+ +  S  E
Sbjct: 850 EKAKELEDEKGRILDIVELSRKYVSELETSLAE 882


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,347,842
Number of Sequences: 59808
Number of extensions: 350057
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)