Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0807
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    29   4.6  

>Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical
           protein Y7A9C.8 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 391 YYLSQFNFWVLFFNVTRYPEKT*LLENIIARFLQKSRTT 275
           +YL  F F+VL FN+ R  +K  LL   ++ F +  + T
Sbjct: 30  FYLITFPFYVLSFNLNRMRDKNTLLFPTVSHFYEMVKFT 68


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 163 SKEIKDEKNRYCQTFELSKTAVNLIAFSSYENLF 264
           SK+  +EKNR C    ++ T   LIAFS+Y  ++
Sbjct: 4   SKKKSEEKNRQCDDSNVNDTI--LIAFSNYSEVY 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,147
Number of Sequences: 27780
Number of extensions: 278010
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)