Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0806
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.5  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   6.5  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   6.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   6.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 288 EEDYVPHEVIRIVEPSY 338
           E+ Y+  EV+R+ +P Y
Sbjct: 337 EKKYILQEVVRVKKPHY 353


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 218 EVHVHHLLVVYNGEAVLNKTGPSFT 144
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 214 YTSITSWSFTMGKLSSTKRVQVSRKNSLPLQLTINFMVSGFTLRISLKRVSFWFL 50
           Y S    S+T+  + S  R+  +  NSL +   + F+     + ++L    F FL
Sbjct: 57  YFSFYITSYTLLSVYSLFRIATNENNSLVINKRLIFIECFVMMALTLIVTLFTFL 111


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 214 YTSITSWSFTMGKLSSTKRVQVSRKNSLPLQLTINFMVSGFTLRISLKRVSFWFL 50
           Y S    S+T+  + S  R+  +  NSL +   + F+     + ++L    F FL
Sbjct: 57  YFSFYITSYTLLSVYSLFRIATNENNSLVINKRLIFIECFVMMALTLIVTLFTFL 111


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 218 EVHVHHLLVVYNGEAVLNKTGPSFT 144
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 218 EVHVHHLLVVYNGEAVLNKTGPSFT 144
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 570  PPLFTGSGVLKHYTLV 617
            PPL   +GV+K Y ++
Sbjct: 1124 PPLTAANGVIKGYKVI 1139


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 235 PHAPTGATSSSLNTLLGGKKTTCP 306
           PH P  A   SL++ LGG  +  P
Sbjct: 72  PHGPPYAPHPSLSSGLGGGLSGMP 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,887
Number of Sequences: 336
Number of extensions: 3798
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)