Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0806
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   29   3.1  
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   29   4.1  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   5.5  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    28   5.5  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   5.5  
SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                27   9.6  

>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +2

Query: 2   SSRQLHGCRRSLFRTGQKPKT---YPF*RNS-QC-ETRY 103
           +S  + GC  SL   GQ PK+   +PF R++ QC E+RY
Sbjct: 58  NSTAIFGCNMSLLNKGQSPKSRRVHPFARHAGQCAESRY 96


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 309 EVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYI 488
           E I +    ++  NN   +   +  GG    +  +E   S E+  N V WEN    + YI
Sbjct: 101 ETINVTGNYWLPSNNVLELKYLRDIGGVTWTDNCAECCLSKETSQNSVTWENLRSEMYYI 160

Query: 489 GTD 497
           G +
Sbjct: 161 GIE 163


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 214 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 312
           T S T  P  PT + +SS  +  GG KTT  C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 223 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 309
           P S  H+P  +T  S+NT+L  +   CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 60  KLTLF-KEIRSVKPDTM--KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANL 230
           KL +F K+     PD +  ++++  S ++  RE W   +    PI     + + +   +L
Sbjct: 96  KLQIFVKQKLEGVPDKIMGRVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSL 153

Query: 231 KPTRPNRCYKFLA 269
            PTRPNR  K +A
Sbjct: 154 LPTRPNRTSKPIA 166


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 135 EFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 242
           E  RET  R  E+ FP++   E+    L+  LK T+
Sbjct: 170 ESCRETGKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 500 RVCADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAA 384
           R   D + GF+E L Y    KRLE  G L    H+W ++
Sbjct: 326 RSLTDHSKGFIEKLLYKIPSKRLEVAGAL---THEWLSS 361


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 220 SPTSNPHAPTGATSSSLNTLLGGKKTTCPTK 312
           S T  P  PT + +SS  +  GG KTT  TK
Sbjct: 578 SRTRTPPTPTSSRASSRGSAGGGAKTTKTTK 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,780,459
Number of Sequences: 59808
Number of extensions: 475073
Number of successful extensions: 1336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)