Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0806
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.9  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
 Frame = +3

Query: 183  IVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIR-----IVEPSYVGM 347
            + N  +   + ++ +L P   N  Y  +A++ L  E  +    V+      IVEP+ V +
Sbjct: 660  VTNMDQYNSILMIEHLSPDH-NGNYSCVARN-LAAEVSHTQRLVVHVPPRWIVEPTDVSV 717

Query: 348  NNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGTDSAEEEEILIE 527
                 ++L  +  G P   I  +     +S     + E  Y  I+  GT   +  +   E
Sbjct: 718  ERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKEDRE 777

Query: 528  GFF 536
            GF+
Sbjct: 778  GFY 780


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 321 IVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGTDS 500
           IVEP+ V +     ++L  +  G P   I  +     +S     + E  Y  I+  GT  
Sbjct: 713 IVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLL 772

Query: 501 AEEEEILIEGFF 536
            +  +   EGF+
Sbjct: 773 LQHVKEDREGFY 784


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 171 DSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVP 305
           +SF I++    + +  +A L           L ++  +WEE Y+P
Sbjct: 194 ESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIP 238


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 460 SHMTRFTNDSNELVYSLWMFMIGQPPPFLA 371
           SH    + D N  VY +W+  +    P LA
Sbjct: 575 SHFINHSCDPNLAVYGVWINCLDPNLPKLA 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,306
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)