Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0804
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.40 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   1.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.8  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    27   2.8  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   2.8  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    26   3.7  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.7  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.9  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   6.5  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.6  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 185 WPIYRASPVLSSAYQCMPSIDSMSLIYRMKSVGESTEPCGTPALMV 48
           WP Y         Y    +  S+ L YR KSV ES EP G P L +
Sbjct: 116 WPSYVRFVDFDERYTRFANKYSLYL-YREKSVEESDEPSGIPILFI 160


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 414 RHFERCPVSESFGRQSQVGVLNAGSPQ 494
           ++FE CPVS++ GR S+  +L   +P+
Sbjct: 353 QNFEWCPVSDALGRDSKEQLLAYWTPE 379


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 236 DTSFDRLSCTALRERL*WPIYRASPVLSSAYQCM 135
           + SF+ L CT  R RL  P+   +P+    Y C+
Sbjct: 614 EASFEELPCTCGRTRLYPPVACGTPIPDCPYLCV 647


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 61  GVPQGSVLSPTLFILYINDML 123
           G+PQGS+LS  L   Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 320 ARSLRRRTPLSWRRNSKEYPCNLPRVSGYLGSTFR 424
           A +L R    SW  NS+E+P +L   +G +G   +
Sbjct: 124 ADNLTRPHWTSWTENSEEFPSSLVMSTGVIGQRLK 158


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 222 SSLLHRAPRETLMADISRIP 163
           S+++ R P ET +AD+SR+P
Sbjct: 441 SAVITRNPSETSLADLSRVP 460


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 119 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 33
           MSL+Y  +SVG  T PCG+   +  ++ Q
Sbjct: 1   MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 61  GVPQGSVLSPTLFILYINDM 120
           G PQGS++SP L  +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 345 GVLLRSERANLCLYRVELN*VQFTPFGDS 259
           G+L++ ER NL  YRV L   QF P  DS
Sbjct: 688 GILIKPERYNLFKYRVYL--PQFLPPTDS 714


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  QGSVLSPTLFILYINDMLSIDGMHWY 147
           + S L+ +L  LY+ D + ID  H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 353 WRRNSKEYPCNLPRVSGYLGSTFRAMSSFGVIWKAKPSWRPKCWESSTEQS 505
           W++ +++   N  R  G     F A   F  +  +K  W+PK W+SS  ++
Sbjct: 39  WKQEARDER-NRKRFHGAFTGGFSA-GYFNTVG-SKEGWQPKSWKSSRNEN 86


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 37  SDTMTINAGVPQGSVLSPTLFILYINDMLSI 129
           S  +T+ + VP+ S      FI Y + +LSI
Sbjct: 39  SSRLTVRSAVPEKSAFGSIEFIFYFSVILSI 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,280
Number of Sequences: 5004
Number of extensions: 63401
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)