Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0804
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 30 1.7
05_01_0093 - 617515-619260 29 3.8
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584... 25 6.3
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 6.7
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 28 6.7
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 27 8.9
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 27 8.9
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 22 VDGDCSDTMTINAGVPQGSVLSPTLFIL 105
++G+ +DT+ + G+ QG +SP LF+L
Sbjct: 301 INGELTDTVVPSRGIRQGDPISPYLFLL 328
>05_01_0093 - 617515-619260
Length = 581
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 35 ALIP*PLTLAFHKVRCSPPRFSSCISMTCCLLMACIGMRMTARGMRD-ISAIRVSLGARC 211
+L+P P T+ F SPPR S+ ++ A +G + R + D + A R S GAR
Sbjct: 154 SLLPAPRTVRFADETGSPPRGSTAATVQEMDTEALLGRALQLRQLLDRVLACRPSGGARQ 213
Query: 212 KR 217
R
Sbjct: 214 SR 215
>04_01_0450 -
5840015-5840055,5840635-5840977,5841326-5841537,
5842381-5842477
Length = 230
Score = 24.6 bits (51), Expect(2) = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 490 GLPAFRTPTWLCLPNDSETGHRSKCRPQVSRYSRKVAGILLGIAAP*QR--GPSSQ 329
G+ + WL D E H S+C Q++ + +V +L A +R GP+S+
Sbjct: 61 GMNVYEQRRWLATRQDGELRHASRC--QLTEHMAEVGREVLKEMAEGKRKGGPTSR 114
Score = 21.8 bits (44), Expect(2) = 6.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 346 RGPSSQ*TRKLVSLSG*IELSSIHPIRRLAPESSP 242
R P + + + ++G ELSSI ++ +P S P
Sbjct: 127 RSPETTSSEGKLRVAGSSELSSISEVKGSSPSSLP 161
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 74 VRCSPPRFSSCISMTCCLLMACIGMRMTARGMRDISAI-RVS 196
VR + PR S ++ TC ++ + +R+ A M+D+ A+ R+S
Sbjct: 747 VRVTLPRLPSWVNSTCVPHLSHLDLRVKAMEMQDLEALARIS 788
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -1
Query: 549 LCFIKQKSL----SRREVPLCSVE-DSQHLGRQLGFAFQMTPKLDIARNVDPKYPDTLGR 385
L I QKSL S PL + + LGR + A +T +D+ R V+ KYP L +
Sbjct: 1144 LLIILQKSLKPVGSSVTTPLKRTQTQTSFLGRMVFRASNITVDMDLVRQVEAKYPAFLFK 1203
Query: 384 LQ 379
Q
Sbjct: 1204 QQ 1205
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 168 IPRAVIRIPM--HAINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 40
IP A++R+ + + + + + D+K GE T++ + V G GI
Sbjct: 297 IPAALVRVSLAGYRLAEHNYFGVDDQKNFGESLTIFYSMVLGQGI 341
>07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 193 LSRSAVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKD 342
L R A ++ R L++ + SL S+W + L+ +PI +V F KKD
Sbjct: 1220 LRRCANRQVRKTLLA-ILRSLSLRSDWRVIVLLHSHPILVKVYLFNKKKD 1268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,816,255
Number of Sequences: 37544
Number of extensions: 459039
Number of successful extensions: 1377
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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