Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0804
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    58   7e-09
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    55   5e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    39   0.003
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    34   0.092
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    33   0.16 
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    33   0.21 
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    31   0.65 
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    29   2.0  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    29   2.0  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    29   2.0  
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    28   4.6  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    28   4.6  
Z71266-9|CAD24483.1|  489|Caenorhabditis elegans Hypothetical pr...    28   6.0  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    28   6.0  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    28   6.0  
AB040992-1|BAB21560.1|  489|Caenorhabditis elegans CeCRMP/DHP-1 ...    28   6.0  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 50/179 (27%), Positives = 80/179 (44%)
 Frame = +1

Query: 52   INAGVPQGSVLSPTLFILYINDMLSIDGMHWYADDSTGDARYIGHQSLSRSAVQERRSKL 231
            I++GVPQGSV  P LFIL+IN++L ID           D   I H               
Sbjct: 877  ISSGVPQGSVSGPLLFILFINNLL-IDLAPTINISCFADDVKIFHTD------------- 922

Query: 232  VSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILG 411
             + ++NS+  +  W +LN +   P K+ + A   +      +    GV + PS ++  LG
Sbjct: 923  PTIIQNSIDIIVSWSKLNELPLAPTKSALLALGTRNKN--QSYSVDGVPITPSSTVRDLG 980

Query: 412  VDISSDVQFRSHLEGKAKLAS*MLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWA 588
            +     ++F  H+   + LA      + +A    +P     LYK  V P + YCS ++A
Sbjct: 981  LITDCKLKFEHHIVKVSCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
 Frame = +1

Query: 7   SITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHWYADDSTGDARYIGH 186
           S  V +    S       GVPQG+VLSP LF +Y+ND+ SI        +     ++   
Sbjct: 58  SFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSI------LPEKVACKQFADD 111

Query: 187 QSLSRSAVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQF 366
             L  S     +++  + ++++L  V +W + + +  N  KT     T  K         
Sbjct: 112 TKLYAST---PKTESENNLQSALDAVVDWTKGSKLTLNQSKT--VHVTVGKRRIDFKYHL 166

Query: 367 QGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLAS*MLGVLNRAKRYFTPGQRL--LLY 540
            G  ++       LG  IS  + F  H      LA   L   N   +Y T  ++L  LLY
Sbjct: 167 DGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLA--NMFNKYSTSNKKLMILLY 224

Query: 541 KAQVRPRVEY 570
           K  +RPR+EY
Sbjct: 225 KTFIRPRLEY 234


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 25  DGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDG--MHWYADDSTGDAR 174
           D   S   T+  GVPQGSV+SP LF  Y+ DM +     +  YADD +  AR
Sbjct: 520 DNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIAR 571


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = +1

Query: 52  INAGVPQGSVLSPTLFILYINDML 123
           I++GVP+GSV  P LF+++IN +L
Sbjct: 53  ISSGVPKGSVSGPFLFLIFINSLL 76



 Score = 30.7 bits (66), Expect = 0.86
 Identities = 22/92 (23%), Positives = 41/92 (44%)
 Frame = +1

Query: 334 KKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLAS*MLGVLNRAKRYF 513
           KK+P  +  +   + + PS     LG+   S + F+ H++    LA      L ++ +  
Sbjct: 175 KKNPKTVY-KINNLPISPSNIARDLGILTDSKLTFKPHIKKIVSLALLRCKQLLKSFKSL 233

Query: 514 TPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQL 609
            P     L+K  + P +EY S +++  P   L
Sbjct: 234 CPEFYCNLFKTYILPLIEYGSAVYSPKPSSSL 265


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 406 LGVDISSDVQFRSHLEGKAKLAS*MLGVLNRAKRYFTPGQRL--LLYKAQVRPRVEY 570
           LG  IS  + F  H +    LA   L   N   +Y T  ++L  LLYK  +RPR+EY
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLA--NIFNQYSTSNKKLMILLYKTFIRPRLEY 204


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 73   GSVLSPTLFILYINDMLSIDGMHWYADDSTGD--ARYIGHQSLSRSAVQERRSKLVSEVE 246
            G   SP   + +  D  S+  + WY +  TGD   +Y  H SL     ++R  KLV++ +
Sbjct: 1975 GKCRSPDKRVFFATDDGSLHSVGWYKNSKTGDLIQKYRAH-SLHSDIGKKRILKLVADAK 2033

Query: 247  NSL 255
            N L
Sbjct: 2034 NDL 2036


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 119 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 33
           +SL    KS GE T+PCGTP    + SE+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 227 FDRLSCTALRERL*WPIYRASPVLSSAYQCMPSIDSMSLIYRMKSVGESTEPCGTPA 57
           F ++ C +LR R   P+ R+ P+  S      S+ ++  ++ M   GE+  P G  A
Sbjct: 283 FSQMCCNSLRRR---PVRRSHPISPSPGTSPSSVVTIQNVFGMTLSGEANGPAGQEA 336


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = -3

Query: 370 LGIAAP*QRGPSSQ*TRKLVSLSG*IELSSIHPIRRLAPESSPLQTQVLIVSLAPRSERD 191
           + I A  ++ PSS  +R+ +S+     + ++  I   AP+S P       +     S+  
Sbjct: 605 VSIEASVEKSPSSSTSRRSISIRSSPSIHTVSAISTAAPDSRPSTASATSIISKKSSKNS 664

Query: 190 SDGRYIAHP 164
           + G+++  P
Sbjct: 665 TVGKFVKAP 673


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 274 PIRRLAPESSPLQTQVLIVSLAPRSERDSDGRYIA 170
           P+RRL P+S  + T   ++ L P   R+ DG Y++
Sbjct: 295 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 329


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 274 PIRRLAPESSPLQTQVLIVSLAPRSERDSDGRYIA 170
           P+RRL P+S  + T   ++ L P   R+ DG Y++
Sbjct: 311 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 345


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 274 PIRRLAPESSPLQTQVLIVSLAPRSERDSDGRYIA 170
           P+RRL P+S  + T   ++ L P   R+ DG Y++
Sbjct: 311 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 345


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 38  LIP*PLTLAFHKVRCSPPRFSSCISMTCCLLMAC 139
           L+P P+TL F ++ C P  F+  +    C +  C
Sbjct: 17  LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 50


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 38  LIP*PLTLAFHKVRCSPPRFSSCISMTCCLLMAC 139
           L+P P+TL F ++ C P  F+  +    C +  C
Sbjct: 90  LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 123


>Z71266-9|CAD24483.1|  489|Caenorhabditis elegans Hypothetical
           protein R06C7.3 protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 LSIDGMHWYADDSTGDARYIGHQSLSR 201
           L++DG H+Y +D    ARY+    LSR
Sbjct: 274 LALDGSHYYNEDWLHAARYVMSPPLSR 300


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 196 RDSDGRYIAHPPCCHPHTNACHQ*TAC 116
           R +DGR +    C  P  NACH+   C
Sbjct: 63  RLADGRCLVVNECARPSLNACHKDAQC 89


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 196 RDSDGRYIAHPPCCHPHTNACHQ*TAC 116
           R +DGR +    C  P  NACH+   C
Sbjct: 63  RLADGRCLVVNECARPSLNACHKDAQC 89


>AB040992-1|BAB21560.1|  489|Caenorhabditis elegans CeCRMP/DHP-1
           protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 LSIDGMHWYADDSTGDARYIGHQSLSR 201
           L++DG H+Y +D    ARY+    LSR
Sbjct: 274 LALDGSHYYNEDWLHAARYVMSPPLSR 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,729
Number of Sequences: 27780
Number of extensions: 364587
Number of successful extensions: 1139
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)