Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0804
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.44 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.44 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.77 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 399 DTLGRLQGYSLELRRHDKGVLLRSERANLCLYRVELN*VQFTPFGDSPQR--VLHFR 235
           D   +L+G    +  +D+GV  ++   N+       + V+F   GD   R  +L+FR
Sbjct: 350 DVCSKLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 406


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 399 DTLGRLQGYSLELRRHDKGVLLRSERANLCLYRVELN*VQFTPFGDSPQR--VLHFR 235
           D   +L+G    +  +D+GV  ++   N+       + V+F   GD   R  +L+FR
Sbjct: 440 DVCSKLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 496


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 167 SPVLSSAYQCMPSIDSMSLI 108
           +PVL S +Q  PSIDS + I
Sbjct: 531 TPVLPSRFQSHPSIDSANTI 550


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = +2

Query: 458 KPSWRPKCWESSTEQSGTSR 517
           +P+W+   W+   ++  TS+
Sbjct: 419 EPAWKTHVWKKGRDKKSTSK 438


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 211 QERRSKLVSEVENSLGRVSEW 273
           QER S+LV  +EN    V  W
Sbjct: 465 QERESELVPYLENKGNGVYAW 485



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 482 WESSTEQSGTSRLDKDFCFIKHKSGLAWSTA 574
           W  +   S +  LD    F+ HK  L  STA
Sbjct: 485 WIGAGRDSDSRLLDLCTKFLMHKDSLGLSTA 515


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 310 TQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHL 450
           T  C+ T    P  ++    G ++ PSE + +  +D  + +    HL
Sbjct: 629 TLTCSVTRGDLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMIEHL 675


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 226 LIVSLAPRSERDSDG 182
           L+  + PRS +DSDG
Sbjct: 31  LVYQIYPRSFQDSDG 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,997
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)