Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0803
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 66 3e-11
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 48 1e-05
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 46 4e-05
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 45 6e-05
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 45 6e-05
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 44 2e-04
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512... 39 0.004
12_02_1272 + 27475302-27475491,27476792-27476876,27477076-274771... 35 0.078
02_01_0678 - 5045565-5045834,5046900-5046995 31 0.96
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175... 30 2.2
07_03_1286 + 25482632-25482685,25483948-25484145,25484242-254844... 29 2.9
12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477 29 5.1
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/73 (42%), Positives = 48/73 (65%)
Frame = +2
Query: 107 PRVSDKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKL 286
P DK LA+ +A+V EV G+M N+EKVL+R +K+ L ++ + L+ A F + K+
Sbjct: 128 PEEIDK-LAKVKAQVTEVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQDFRKAGTKI 186
Query: 287 KRKYWWQNLKMML 325
+RK WW+N+KM L
Sbjct: 187 RRKMWWENMKMKL 199
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/65 (29%), Positives = 40/65 (61%)
Frame = +2
Query: 125 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 304
R+ + + ++ +V +M N++KVLER +L L ++ +Q +F++QA + + WW
Sbjct: 127 RINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQARRFRNTTWW 186
Query: 305 QNLKM 319
+N+K+
Sbjct: 187 RNVKL 191
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = +2
Query: 155 EVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMM 322
E+ +M N+EK+L+R +++S L ++ +Q A F +Q+ +L+R W +N K++
Sbjct: 139 EIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNAKLL 194
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +2
Query: 185 EKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 325
+K L R +KLSEL ++ LQ A +F+++ K++RK W QN+K+ L
Sbjct: 201 KKTLGRGEKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMKIKL 247
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +2
Query: 155 EVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKM 319
+V +M N++KVLER +L L ++ +Q +F++QA + + WW+N+K+
Sbjct: 173 QVRNVMIDNIDKVLERGDRLELLVDKTATMQGNTMRFKRQARRFRNTVWWRNVKL 227
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +2
Query: 125 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQ 271
+LA+ +A+V EV G+M N+EKVL+R +K+ L ++ + L+ A F Q
Sbjct: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQ 178
>07_01_0680 +
5128023-5128212,5128629-5128667,5129496-5129637,
5129727-5129847,5129951-5130013,5130114-5130203,
5130572-5130619,5131114-5131260
Length = 279
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/41 (41%), Positives = 30/41 (73%)
Frame = +2
Query: 125 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQ 247
+LA+ +A+V EV G+M N+EKVL+R +K+ L ++ + L+
Sbjct: 143 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR 183
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 254 AAQFEQQAGKLKRKYWWQNLKMML 325
A F QQ K++RK W QN+K+ L
Sbjct: 232 AQDFRQQGTKVRRKMWLQNMKIKL 255
>12_02_1272 +
27475302-27475491,27476792-27476876,27477076-27477196,
27477443-27477586
Length = 179
Score = 34.7 bits (76), Expect = 0.078
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +2
Query: 125 RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKYWW 304
+LA+ +A+V EV GIM N++K AA F QQ +++RK W+
Sbjct: 111 KLAKVKAQVSEVKGIMMENIDK---------------------AADFRQQGTRVRRKMWY 149
Query: 305 QNLKMML 325
QN+K+ L
Sbjct: 150 QNMKIKL 156
>02_01_0678 - 5045565-5045834,5046900-5046995
Length = 121
Score = 31.1 bits (67), Expect = 0.96
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 74 IKMEEQGGSSAPRVSDK---RLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADAL 244
++ E QG +S + +K R+A+ +V +RV VE++ E++Q E ++ DA+
Sbjct: 27 VRGELQGTNSQLSLLEKMNRRVAEEYNNYGDVASGLRVFVEQLNEKNQSFGEYVSQIDAI 86
Query: 245 QHGAAQFEQQAGKLKR 292
+FE L +
Sbjct: 87 DQQVTEFEAVVSMLDK 102
>02_01_0265 -
1754861-1755063,1755186-1755360,1755558-1755653,
1756110-1756256,1756343-1756511,1756661-1756812,
1756898-1756968,1757064-1757247,1757332-1757523,
1757664-1757771
Length = 498
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 119 DKRLAQTQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQ 271
++ L ++ +DE+ +++ NV+ + +K+ EL + D L+ A EQ
Sbjct: 143 EQELKSSKRSLDELTAMLKANVDAINNFTRKMEELKRQRDDLKALEANLEQ 193
>07_03_1286 +
25482632-25482685,25483948-25484145,25484242-25484464,
25484762-25484958,25485150-25485237,25487103-25487197,
25487585-25487705,25487795-25487831,25487924-25487951,
25488175-25488327,25488666-25488768,25488868-25488932
Length = 453
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 83 EEQGGSSAP--RVSDKRLAQTQAKVDE-VVGIMRVNVEKVLERDQKLSELDNRADA 241
EE GS P R S KRL T +D+ VV ++ +++ E+D + + ADA
Sbjct: 197 EETKGSGEPNGRCSKKRLKSTANTMDDQVVPFVKAELQEAREKDADIHDNSMEADA 252
>12_02_0218 - 15817184-15817480,15817564-15817734,15818241-15818477
Length = 234
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 137 TQAKVDEVVGIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQA 277
TQA+ DE V + EK E+ QK++EL R + H + QQA
Sbjct: 92 TQAQWDEFVALTTSAEEK--EKSQKMAELARRNEYPHHSVSTGYQQA 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,987
Number of Sequences: 37544
Number of extensions: 307683
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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