Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0803
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75) 28 6.9
SB_37661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 28 6.9
SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_14589| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39) 28 9.1
SB_25944| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 9.1
SB_9891| Best HMM Match : KE2 (HMM E-Value=1) 28 9.1
>SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 471 SIYCDWDRGSETTKRDWTKETCNRRTLYFYMSFTF 575
SI+ D+D S RDWT C++ + ++ F F
Sbjct: 339 SIHIDYDVISHPDIRDWTMRFCSKMNITGFLCFDF 373
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +3
Query: 228 IAQMRCNMGLHSLNSKLENLSASIGGRI 311
+A +R N+G++++ S +ENL++ + G+I
Sbjct: 37 MAALRDNLGINTIQSAVENLTSLVSGQI 64
>SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75)
Length = 886
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +3
Query: 228 IAQMRCNMGLHSLNSKLENLSASIGGRI 311
+A +R N+G++++ S +ENL++ + G++
Sbjct: 37 MAALRDNLGINTIQSAVENLTSLVSGQV 64
>SB_37661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 459 YIPKSIYCDWDRGSETTKRDWTKETCNRRTLYFYMSFTF 575
YI K+ Y D S T ++W+ T N+ L+FY + F
Sbjct: 83 YIFKNCYVDV---SVRTLQEWSSLTANKSDLFFYAKYMF 118
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +2
Query: 71 TIKMEEQGG--SSAPRVSDKRLAQTQAKVDEVVGIMRVNVEKVLER----DQKLSELDNR 232
T+ M E+GG S A R + R +Q + +V+E + + + K+ R D+KL L +
Sbjct: 2285 TLTMTEKGGHLSLAQREVEHRKSQLE-RVEEKLALEKEQNAKLSSRLDTKDEKLQTLISE 2343
Query: 233 ADALQHGAAQFEQQAGKLKRKY 298
D+L+ ++ K + KY
Sbjct: 2344 CDSLKRQLEGVNEKNRKAEEKY 2365
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +3
Query: 474 IYCDWDRGSETTKRDWTK----ETCNRRTLYFYMSFTFSLKNIEKFILFTKVPNKILYNF 641
+YC + G E+ R K ET N T + F+ +E+ T + NK+ NF
Sbjct: 412 VYCKFKTGGESCVRPALKMIPKETWNNATTAGWYQFS----KLERGYKITYLTNKVQLNF 467
Query: 642 IKVNTLRLLL*KIVIFSS*LAFIFNSGQQYFY 737
+++ T ++ IV S + + + Y Y
Sbjct: 468 LRLLTTKVTQKIIVKCKSVVVWFHRHSKSYDY 499
>SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +3
Query: 228 IAQMRCNMGLHSLNSKLENLSASIGGRI 311
+A +R N+G++++ S +ENL++ + G++
Sbjct: 42 MAALRDNLGINTIQSAVENLTSLVSGQV 69
>SB_14589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +3
Query: 228 IAQMRCNMGLHSLNSKLENLSASIGGRI 311
+A +R N+G++++ S +ENL++ + G++
Sbjct: 77 MAALRDNLGINTIQSAVENLTSLVSGQV 104
>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
Length = 894
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 124 FVAYSWCGTSSLFFHFYCILCTVFIKYQCECNSIK 20
FVA W T S FY CT+ +Y+C S K
Sbjct: 699 FVACYWDETWSYVACFYSSECTILFEYRCVSPSSK 733
>SB_25944| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 329
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 474 YFLEYMFKLANYRPTSLGASVTGGAAGDD 388
Y LEY F A Y+P S G S+ G DD
Sbjct: 263 YRLEYSFNDAYYQPYSDGKSMPGNTNRDD 291
>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
Length = 572
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 164 GIMRVNVEKVLERDQKLSELDNRADALQHGAAQFEQQAGKLKRKY 298
GI + +E +E QK+ ELD + + Q G + KLK++Y
Sbjct: 454 GIAELELE--VEAQQKMEELDKQLNLQQSGLEAVDVNLPKLKQEY 496
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,782,626
Number of Sequences: 59808
Number of extensions: 375243
Number of successful extensions: 1072
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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