Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0802
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    55   5e-08
U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = +1

Query: 1   ITGTFSMRQNARNNRDLDFEIEIDFKGELCQVNEKNHYRM 120
           ITG+F M  N  N RDLD  I  DFKGE+C +NE+N Y M
Sbjct: 308 ITGSFEMAPNKNNERDLDINISFDFKGEVCDLNEQNTYTM 347


>U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical
           protein F21D12.3 protein.
          Length = 496

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 170 ILYMLPSSKITYMYVPYP*RIDTMSSCTFLVRLEFLI 280
           ++Y+L S+ I + ++ +   +D++S+C  +  L FLI
Sbjct: 145 VVYLLLSANIIHFFISHVLHVDSISNCLVITVLAFLI 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,918,750
Number of Sequences: 27780
Number of extensions: 358366
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)