Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0800
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   206   2e-54
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   203   2e-53
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   5.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  206 bits (504), Expect = 2e-54
 Identities = 101/135 (74%), Positives = 112/135 (82%)
 Frame = +2

Query: 2   KVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNF 181
           KVFYYKMKGDY+RYLAEFA G  R+ +A+ SL  YKAAS+IA  EL PTHPIRLGLALNF
Sbjct: 120 KVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNF 179

Query: 182 SVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQG 361
           SVFYYEILNSPDRAC LAK AFD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD + 
Sbjct: 180 SVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEY 239

Query: 362 DGESADAEQKEPAQD 406
              +A     E AQ+
Sbjct: 240 SAAAAGG-NTEGAQE 253


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  203 bits (495), Expect = 2e-53
 Identities = 100/139 (71%), Positives = 115/139 (82%)
 Frame = +2

Query: 2   KVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNF 181
           KVFYYKMKGDY+RYLAEF  G   KEAA++SL AYKAASDIA+ ELPPT P+RLGLALNF
Sbjct: 119 KVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNF 178

Query: 182 SVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQG 361
           SVFYYEIL+SP+ AC LAK  FD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD + 
Sbjct: 179 SVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEY 238

Query: 362 DGESADAEQKEPAQDGEDQ 418
           + +SA  E    A   E++
Sbjct: 239 N-QSAKEEAPAAAAASENE 256


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 110 AASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 244
           AA  + MT  +L  T P  LG+  +  V YY     PD A   AK A
Sbjct: 265 AAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVA 311


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 420 SWSSPSCAGSFCSASADSPSPCMSEVHS 337
           S SS S + +F SAS  SPS   S + S
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISS 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,968
Number of Sequences: 5004
Number of extensions: 31040
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)