Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0799
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0292 + 16979550-16980662,16983249-16983731                       28   6.4  
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809...    28   6.4  

>12_02_0292 + 16979550-16980662,16983249-16983731
          Length = 531

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 247 TSVARWALKIEFFYERLLESCLDHQHEVRSAFT--VDFTA 360
           T ++RWA  ++ FYE  L    DHQ  +    T   D TA
Sbjct: 130 TRLSRWAEAVDDFYEEALLEIDDHQRRMEELETEVTDLTA 169


>07_03_1696 -
           28779455-28779733,28779813-28780074,28780805-28780956,
           28781765-28781961,28782258-28782462,28782737-28782982,
           28783603-28783719,28784206-28784397,28784480-28784693,
           28784835-28784926,28784952-28785001,28785494-28785812,
           28785908-28786068,28786407-28786650,28787212-28787467,
           28787634-28787834,28788568-28788910,28789003-28789064,
           28789645-28789851,28790170-28790978
          Length = 1535

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 277 EFFYERLLESCLDHQHEV 330
           E+FY++   +C+DH HE+
Sbjct: 675 EYFYQKQHATCMDHAHEI 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,992
Number of Sequences: 37544
Number of extensions: 293163
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)