Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0798
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    27   2.5  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   3.3  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   5.8  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   7.7  

>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = +1

Query: 79  NCLVGNKISFTAQPRNAVVVKLNAPINSVYAANEFV*LFQALFIQL*NLPARVAVVKTAM 258
           +C   + +  +   + ++V+   AP+  +     F+ +  AL   + +L  R   VK  M
Sbjct: 300 SCFFLSSLFISPSNKESLVILFAAPVFLITLFAMFLWIVLALNNTIRDLRIRKQTVKAQM 359

Query: 259 YVRTYIVV*IVCFDSLSW 312
           Y R +IV   +CF  +++
Sbjct: 360 YTRLWIV---ICFGIVAY 374


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 564 LLL*EIWRPISFVEKIKYYTIISI 635
           LL   +W PI    KI+Y+TI +I
Sbjct: 535 LLKESLWDPIGITTKIEYFTICAI 558


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 123 SWLCCERYFVS 91
           SW+CC +YFV+
Sbjct: 7   SWICCAKYFVN 17


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 180 VCLTFSSLVYSTIKLASESCSCKNSDVCTYVYRGV 284
           V L    +    +++A E CS KN+DV    ++ +
Sbjct: 545 VALELVKIADKLLRVAKEVCSAKNNDVTDSTFKDI 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,410
Number of Sequences: 5004
Number of extensions: 48458
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)