Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0798
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U40798-7|AAA81477.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC024863-2|AAP31420.1|  366|Caenorhabditis elegans Prion-like-(q...    27   9.4  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    27   9.4  

>Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical
           protein F53H4.5 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 519 LRDNHLEIIISAINNFYKSFIDIATLHNLI*KENCDLN 406
           L DN +++I++ INN  +    I++  N++ K  C LN
Sbjct: 249 LGDNIIDMIVNKINNMREKIKGISSCSNVLLKMLCSLN 286


>U40798-7|AAA81477.1|  342|Caenorhabditis elegans Hypothetical
           protein R13A1.8 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 465 SFIDIATLHNLI*KENCDL--NTWRIVYEQQQITKPSMC 355
           SF  I +  NLI KE+C++  ++WR+V  +    + S C
Sbjct: 150 SFRSIPSEENLIDKESCEVVADSWRLVESRSSAAETSAC 188


>AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical
           protein T10H9.1 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 519 LRDNHLEIIIS-AINNFYKSFIDIATLHNLI*KENCDLNTWRIV 391
           L  +HL +  + A+ NF+  F  I T  NL  + N +   W I+
Sbjct: 51  LTKHHLYLFYAFAVTNFFTGFFTIPTYLNLFYRNNLNCPRWSIL 94


>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 335 NLKSFCLHIDGLVICCCS*TI--LQVFKSQFSF*IKLCNVA 451
           NL    L    +V+CC S TI  +  FK ++ F   LC +A
Sbjct: 63  NLFILSLSCSDIVVCCTSATITPITAFKKEWIFGEALCRIA 103


>AC024863-2|AAP31420.1|  366|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform b protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 SESCSCKNSDVCTYVYRGVNCLF*FSFLDS 317
           S++C+C +   C+++     C F F+F+ S
Sbjct: 141 SQTCTCPSGYTCSFLKTSPRCYFAFTFIVS 170


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 SESCSCKNSDVCTYVYRGVNCLF*FSFLDS 317
           S++C+C +   C+++     C F F+F+ S
Sbjct: 141 SQTCTCPSGYTCSFLKTSPRCYFAFTFIVS 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,473,960
Number of Sequences: 27780
Number of extensions: 266194
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)