Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0797
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   1.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.5  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.5  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 480 LFTTHKFSHTSSMFTRLIFIIH*ILNYKLVYNLSEQGHYVNAIF 349
           +F  ++ +          F+ H   NY  V +L  +GH + A+F
Sbjct: 206 IFNGNRANPNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEI-AVF 248


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 480 LFTTHKFSHTSSMFTRLIFIIH*ILNYKLVYNLSEQGHYVNAIF 349
           +F  ++ +          F+ H   NY  V +L  +GH + A+F
Sbjct: 213 IFNGNRANPNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEI-AVF 255


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 223 KIVIGQYQHWSQVDNN 270
           K+++ ++  W+ +DNN
Sbjct: 680 KLLLKEFDPWADLDNN 695


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 238 QYQHWSQVDNNDTNFE 285
           QY+++ Q DNN+ + E
Sbjct: 142 QYENFQQYDNNNFSAE 157


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 426 FIIH*ILNYKLVYNLSEQGHYV 361
           F+ H   NY  V  +  +GH +
Sbjct: 232 FVSHKYTNYSAVQEMHRKGHEI 253


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 1   WAVSSSTHLSNXXXXXXXXIRPLSCTP 81
           W  ++S   +N        +RP +CTP
Sbjct: 120 WQSATSGGGANLTNSLTGPVRPAACTP 146


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 238 QYQHWSQVDNNDTNFE 285
           QY+++ Q DNN+ + E
Sbjct: 142 QYENFQQYDNNNFSAE 157


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 238 QYQHWSQVDNNDTNFE 285
           QY+++ Q DNN+ + E
Sbjct: 142 QYENFQQYDNNNFSAE 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,952
Number of Sequences: 336
Number of extensions: 2513
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)