Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0797
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    28   1.1  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    25   7.5  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.5  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   9.9  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.9  

>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 355 NILKQVSYLRIPNHINIYKNTFYIQNLYHYYRLETNAD 242
           NILK+V  +R   H NI +   +IQ   +YY +   AD
Sbjct: 177 NILKEVQIMRRVKHPNIIQLLEFIQTPEYYYLVLELAD 214


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 364 RKCNILKQVSYLRIPNHINIYKNTFYIQNLYH 269
           R  N+  + +  R+P H+N +    Y+Q++Y+
Sbjct: 21  RGLNLQPKFAVFRVPLHVNKFDVRDYLQHVYN 52


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 62  GLSLARPHFDGDYVTSHNV--CPFLSILDFTGF*LITIPIYNFLLVLD 199
           GLSLA   F  + V    V  C FL   DF G   IT  +  FLL L+
Sbjct: 255 GLSLALLIFFLNLVPKPTVSFCVFLRDFDFVGIVTITTGVVLFLLGLN 302


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 209 HYLIIK*SLVNISIGLKSIIMIQILNVKSVFVNVNMI--WY 325
           H +  + SL+N+    KS++M    N+  VFV + +I  W+
Sbjct: 38  HSMARQLSLLNVVGMTKSVLMSSYFNLMLVFVPIGLIAGWF 78


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 118 VSFFVNLGFHRFLTNYYTDI*FSSCFRLQITLFNYK 225
           +S+F NLG H  +     ++    CF L+  L NYK
Sbjct: 416 LSWF-NLGSHGLILANILNLSLRICFALRFILHNYK 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,898
Number of Sequences: 5004
Number of extensions: 36732
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)