Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0796
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    32   0.061
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.57 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.7  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   1.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.0  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   5.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   5.3  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   7.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.3  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   9.3  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   9.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.3  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 432 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 590
           I VE    QPEDSK T+V      +S +EK +    + S D  A + +++  +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 387 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 557
           AK S   D   K +  K  + A+ PE SK  V+       KEE  S +++E S+  +
Sbjct: 41  AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 390 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 566
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P        A S    
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505

Query: 567 PNMVKK 584
              VKK
Sbjct: 506 SEDVKK 511


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 442 KNQLLSLKIQKLKYKLPSLKFQKKKNL 522
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 326 VFWGYIVLFGLWYSGYLVVTNW 261
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 408 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 554
           D   +   I  E PA    + K   +  + + S  E+PS T  EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +3

Query: 444 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAA 623
           EP  +P+ S      T  +I+ + + +   + GS    A++ +++K+ID+  ++ES  A+
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 414 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 551
           ++K  + KVEE  ++  D K +   ++    KEEK   TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 411 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 548
           AEA + D   + P       K  V  +VAE  ++E  +  ++E  A
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 396 SEIPDAEAKSAD-IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 572
           +E+P    K    +K ++P ++P + +T+V+   A  ++E +P  +D +          +
Sbjct: 227 AELPTEPPKQTRFLKSQQPTSEP-NVETQVEEQPALENEESEPEPSDDQF---------D 276

Query: 573 MVKKIDLAPNVE 608
           +V+++D+ PNV+
Sbjct: 277 LVEEVDVLPNVD 288


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 408 DAEAKSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKP 521
           D +   +DIK + E +   +DSK +V  TV EIS   +P
Sbjct: 264 DLKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQP 302


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 393  SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 545
            SS   DA AKS   +  EPA +P +   + ++T     + EK + TD   +
Sbjct: 898  SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSST 947


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 402 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE---GSADSAAIIPN 572
           + DA+AK  D +  E     ++    +   +AE+ +E K ++   +          I+  
Sbjct: 730 LEDADAKVKDEESSEEELMNDEQMLALDEKLAEVFRERKKASNKEKKKNAQETKQQIVQF 789

Query: 573 MVKKIDLAPN 602
            VK IDL  N
Sbjct: 790 KVKVIDLIDN 799


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 462 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVP 629
           E+S   +    +E+SK  KP+ TD   +     +      K   +P   + AA  P
Sbjct: 33  EESLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAP 88


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 396 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSA 548
           S IP  E    +I VEE    +P     EV+ T A   +E+ P   D+E +A
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,181
Number of Sequences: 5004
Number of extensions: 32586
Number of successful extensions: 119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)