Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0795
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    27   3.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   6.0  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.9  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    25   7.9  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 608 KADNPHTPLTHKQCVSCTRTPETLPVKDKVRSALQE 501
           K D+P  P+  ++C +CT+     P  D    +L+E
Sbjct: 151 KNDDPVVPVVIEECGTCTKDQIEAPKPDVTGDSLEE 186


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 90  SRGSNQEVLPALARTVLRRIYHR 158
           SR S Q  + +L+R ++RR++H+
Sbjct: 268 SRASLQHKIMSLSRNIIRRVFHK 290


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 632 YRLYTV*FKADNPHTP--LTHKQCVSCTRTPETLPVKDKVRSAL 507
           YRL +     D P     +  K CV   R PET+PV  +  S+L
Sbjct: 205 YRLLSAIIFQDGPSNLAFVLAKDCVLLARQPETIPVSFERMSSL 248


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 210 HSPLSFSPDLLSGSRFRSGGRFCEALFLPVLATPPGLI 97
           H P S    L+    +    RFC+  FL VL+   GL+
Sbjct: 138 HDPKSSVVSLMGEEDYLGWSRFCDLFFLFVLSLGIGLL 175


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 146 SAKHCSCQCWQHL 108
           SAKH SC C+ HL
Sbjct: 534 SAKHPSCNCFSHL 546


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 409  LLLYSRNRQGGGISSYGLTQCLTTSKIACRRW*ICEEEGV 290
            +++Y R  + GG+  YG+       K+  RR  +  +EG+
Sbjct: 1781 VVIYERADRPGGLLQYGIPNMKLDKKVVERRIQLMIDEGI 1820


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 282 PMRAHFSSNPSLATKGSASKLTHRHSPLSFSPDLLSGSRFRSGGRFCEA 136
           P+ +  SS+ +L T+ + S+    H   +     L+G+     GRFC A
Sbjct: 128 PLESEKSSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAA 176


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 115 CQHWQEQCFAESTTGSETRPTEKI 186
           C  W+E C ++ +   E RP E I
Sbjct: 463 CFRWRELCVSDESESMEPRPNEWI 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,670
Number of Sequences: 5004
Number of extensions: 65404
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)