Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0795
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 31 0.88
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 30 2.0
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 28 6.2
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 28 6.2
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 28 6.2
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 28 6.2
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 28 6.2
04_03_0190 + 12448027-12450825 28 8.2
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 28 8.2
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 165 FRSGGRFCEALFLPVLATPP--GLIPESSPTR 76
FRSGGR FLP A PP G P+ SP R
Sbjct: 98 FRSGGRLLREAFLPGAAPPPAVGGGPDPSPPR 129
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = -2
Query: 315 GRYARKRG*YLPMRAHFSSNPSLATKGSASKLTHRHSPLSFSPDLLSGSRFRSGGRFCEA 136
G A KR +P RA +S+P + K K R S SP ++ S + SGG +A
Sbjct: 613 GTAAEKRNSPVPQRARRNSSPPVLPKELTPKAPARKSSPKPSPAPVTRSSW-SGGSLTKA 671
Query: 135 LFLPVLATPPGLIPESSPT 79
+ PG + S+PT
Sbjct: 672 TTAQKTKSSPGTV--SAPT 688
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 80 VGELSGIKPGGVASTGKNSASQNXXXXXXXXXXXXSGEKLSGLCLWVNLLA 232
+G LSG+KP GKN++ + GEK+ + LW ++LA
Sbjct: 115 IGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVK-ITLWGDILA 164
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 80 VGELSGIKPGGVASTGKNSASQNXXXXXXXXXXXXSGEKLSGLCLWVNLLA 232
+G LSG+KP GKN++ + GEK+ + LW ++LA
Sbjct: 115 IGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVK-ITLWGDILA 164
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 80 VGELSGIKPGGVASTGKNSASQNXXXXXXXXXXXXSGEKLSGLCLWVNLLA 232
+G LSG+KP GKN++ + GEK+ + LW ++LA
Sbjct: 115 IGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVK-ITLWGDILA 164
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 80 VGELSGIKPGGVASTGKNSASQNXXXXXXXXXXXXSGEKLSGLCLWVNLLA 232
+G LSG+KP GKN++ + GEK+ + LW ++LA
Sbjct: 493 IGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVK-ITLWGDILA 542
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 80 VGELSGIKPGGVASTGKNSASQNXXXXXXXXXXXXSGEKLSGLCLWVNLLA 232
+G LSG+KP GKN++ + GEK+ + LW ++LA
Sbjct: 294 IGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVK-ITLWGDILA 343
>04_03_0190 + 12448027-12450825
Length = 932
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 276 AWVGTTPSSSHIYHLRHAILLVVRHCVSP*EEIPP 380
AW+ T S +Y++ + +RHC +EIPP
Sbjct: 232 AWIAT----SQVYNICSLLRTTIRHCFKNTKEIPP 262
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 375 VFLLTDLHNALPPVKLRVEDGRYARKRG 292
VF DL N++P R DGR R+RG
Sbjct: 60 VFAFVDLGNSIPVNYYRDPDGRIKRRRG 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,627,139
Number of Sequences: 37544
Number of extensions: 422981
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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