Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0795
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC028024-1|AAH28024.2| 450|Homo sapiens HCN3 protein protein. 31 5.2
BC000066-1|AAH00066.1| 571|Homo sapiens Unknown (protein for IM... 31 5.2
AL713999-31|CAI95100.1| 774|Homo sapiens hyperpolarization acti... 31 5.2
AF488550-1|AAO49470.1| 774|Homo sapiens hyperpolarization activ... 31 5.2
AB040968-1|BAA96059.2| 711|Homo sapiens KIAA1535 protein protein. 31 5.2
BC126261-1|AAI26262.1| 593|Homo sapiens FLJ20273 protein protein. 30 6.9
AK000280-1|BAA91049.1| 524|Homo sapiens protein ( Homo sapiens ... 30 6.9
AF262323-1|AAM21973.1| 593|Homo sapiens RNA-binding protein pro... 30 6.9
AF261889-1|AAM21972.1| 71|Homo sapiens RNA-binding protein pro... 30 6.9
>BC028024-1|AAH28024.2| 450|Homo sapiens HCN3 protein protein.
Length = 450
Score = 30.7 bits (66), Expect = 5.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 270 HFSSNPSLATKGSASKLTHRHSPLSFSPD----LLSGSRFRSGGRFCEALFLPVLATP 109
H + T A LTH+ PL SPD LL+ S +RS G L +PV A P
Sbjct: 284 HAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSAWRSAGSPASPL-VPVRAGP 340
>BC000066-1|AAH00066.1| 571|Homo sapiens Unknown (protein for
IMAGE:3507934) protein.
Length = 571
Score = 30.7 bits (66), Expect = 5.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 270 HFSSNPSLATKGSASKLTHRHSPLSFSPD----LLSGSRFRSGGRFCEALFLPVLATP 109
H + T A LTH+ PL SPD LL+ S +RS G L +PV A P
Sbjct: 405 HAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSAWRSAGSPASPL-VPVRAGP 461
>AL713999-31|CAI95100.1| 774|Homo sapiens hyperpolarization
activated cyclic nucleotide-gated potassium channel 3
protein.
Length = 774
Score = 30.7 bits (66), Expect = 5.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 270 HFSSNPSLATKGSASKLTHRHSPLSFSPD----LLSGSRFRSGGRFCEALFLPVLATP 109
H + T A LTH+ PL SPD LL+ S +RS G L +PV A P
Sbjct: 608 HAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSAWRSAGSPASPL-VPVRAGP 664
>AF488550-1|AAO49470.1| 774|Homo sapiens hyperpolarization
activated cyclic nucleotide-gated potassium channel
protein.
Length = 774
Score = 30.7 bits (66), Expect = 5.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 270 HFSSNPSLATKGSASKLTHRHSPLSFSPD----LLSGSRFRSGGRFCEALFLPVLATP 109
H + T A LTH+ PL SPD LL+ S +RS G L +PV A P
Sbjct: 608 HAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSAWRSAGSPASPL-VPVRAGP 664
>AB040968-1|BAA96059.2| 711|Homo sapiens KIAA1535 protein protein.
Length = 711
Score = 30.7 bits (66), Expect = 5.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 270 HFSSNPSLATKGSASKLTHRHSPLSFSPD----LLSGSRFRSGGRFCEALFLPVLATP 109
H + T A LTH+ PL SPD LL+ S +RS G L +PV A P
Sbjct: 545 HAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSAWRSAGSPASPL-VPVRAGP 601
>BC126261-1|AAI26262.1| 593|Homo sapiens FLJ20273 protein protein.
Length = 593
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -2
Query: 255 PSLATKGSASKLTHRHSPLSFSPDLLSGSRFRSGGRFCEALFLPVLATPP 106
P + G + H SP++ PD S + + A +P ++TPP
Sbjct: 462 PKMIEDGKIHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPP 511
>AK000280-1|BAA91049.1| 524|Homo sapiens protein ( Homo sapiens
cDNA FLJ20273 fis, clone HEP01750. ).
Length = 524
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -2
Query: 255 PSLATKGSASKLTHRHSPLSFSPDLLSGSRFRSGGRFCEALFLPVLATPP 106
P + G + H SP++ PD S + + A +P ++TPP
Sbjct: 393 PKMIEDGKIHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPP 442
>AF262323-1|AAM21973.1| 593|Homo sapiens RNA-binding protein
protein.
Length = 593
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -2
Query: 255 PSLATKGSASKLTHRHSPLSFSPDLLSGSRFRSGGRFCEALFLPVLATPP 106
P + G + H SP++ PD S + + A +P ++TPP
Sbjct: 462 PKMIEDGKIHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPP 511
>AF261889-1|AAM21972.1| 71|Homo sapiens RNA-binding protein
protein.
Length = 71
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -2
Query: 255 PSLATKGSASKLTHRHSPLSFSPDLLSGSRFRSGGRFCEALFLPVLATPP 106
P + G + H SP++ PD S + + A +P ++TPP
Sbjct: 18 PKMIEDGKIHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPP 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,471,910
Number of Sequences: 237096
Number of extensions: 2435376
Number of successful extensions: 4289
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4289
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -