Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0795
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    29   4.2  
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     29   4.2  
Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 629 RLYTV*-FKADNPHTPLTHKQCVSCTR 552
           R+Y V  FK  +P++ LTHK C  C R
Sbjct: 145 RIYVVDHFKKFSPYSNLTHKPCTVCNR 171


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 629 RLYTV*-FKADNPHTPLTHKQCVSCTR 552
           R+Y V  FK  +P++ LTHK C  C R
Sbjct: 145 RIYVVDHFKKFSPYSNLTHKPCTVCNR 171


>Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical
           protein F36D3.8 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 138 LRRIYHRIGNATH*EDPARNSVGCVYGLIYSP 233
           ++R +H+       ED   N+VG  Y   Y P
Sbjct: 151 MKRFWHKFNGLEEHEDKGHNAVGAAYKSFYDP 182


>Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical
           protein T09E8.3 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 15  F*VFFSIYAD-CLDRLYQHYPNV*VSSRGSNQEVLP 119
           F +FF+IY   C+D L   Y N     R  NQ +LP
Sbjct: 19  FCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILP 54


>Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical
           protein ZK829.6 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 YGLIYSPNPSSQETGSMRSELAWV 284
           YG I S NPS Q++  MR    WV
Sbjct: 364 YGPIQSENPSKQDSEKMREVPQWV 387


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 460 LFTEYFILRAVNSNRNVLLLYSRNRQG 380
           +F ++F+ R +NS+++ L +Y   RQG
Sbjct: 812 VFKKHFLERIINSSKDCLSMYQMYRQG 838


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,965,328
Number of Sequences: 27780
Number of extensions: 371606
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)