Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0794
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 28 0.91
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.2
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 27 1.6
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 3.7
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.9
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 4.9
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 6.4
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 6.4
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 8.5
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 8.5
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 28.3 bits (60), Expect = 0.91
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +1
Query: 73 LVKPRRSTADEA--DALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIFLE 246
++K T +E D + L H L L + E T E NYIT+ L
Sbjct: 117 VIKDAEDTTEEKSMDDSDKCLRRLKSHKERLLKLLEDAQKEYDTLEAES-KNYITSEDLH 175
Query: 247 AGNSSTYIQ 273
G STY+Q
Sbjct: 176 LGFDSTYVQ 184
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -2
Query: 421 SSHNKLDTRPSVYQLYSFSGINPL----HLLYKVQSVFTRHLFVISVVLIGMRF 272
S H + D RPS+ YS+S I + + +K QSVF + F + V+L + F
Sbjct: 21 SPHLENDGRPSLMSRYSYSSIEEVSKEGYQWFKHQSVFLK--FSLIVLLFSLMF 72
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 70 LLVKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIFLEA 249
L++ +T DEA L T +T + LAT+F + L + + N F+E+
Sbjct: 76 LMLYISNNTFDEALPLDNFT--ITASENGLATIFVTGYSPLYIAVSSAFSQFAPNFFVES 133
Query: 250 GNSSTYIQNAFQLAL 294
G S+ N L
Sbjct: 134 GESTLEGNNVINYEL 148
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 100 DEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYIT-NIFLEAGNSSTYIQN 276
+ + ALT++ + K + E+L + Q+ +I NIF+++ SSTY+++
Sbjct: 763 ERSGALTRLARQIMKEPTFSILRTKEQLGYIVFTLVRQVTPFINLNIFVQSERSSTYLES 822
Query: 277 AFQLAL 294
+ L
Sbjct: 823 RIRALL 828
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 267 VSRTVAGL*KYIRDVIMYLLRILCLQFIQFLGEE 166
V++T+AGL KY+ I L I+ + LG E
Sbjct: 161 VAKTIAGLVKYVAKAIQGLAHIILSLLLFILGLE 194
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 136 LTKHVSELATLFTEKLNELQTENTEQIHNYITNIFLEAGNSSTYIQNA 279
LT+ ++EL +F +L T EQ +TNI GN+ST +NA
Sbjct: 182 LTQGINELNEIF----RDLSTIINEQ-GELVTNIEYNVGNTSTNTKNA 224
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 154 ELATLFTEKLNELQTENTEQIHNYITNI 237
E+ATL EK + + +E+ E + N+I ++
Sbjct: 457 EVATLLKEKNSSVSSESLEVLSNWIVSV 484
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 139 TKHVSELATLFTEKLNELQTENTEQIHNYITNIFLEAGN 255
TK ELA + ++L EL+ + ++ +Y + EAG+
Sbjct: 293 TKTEEELAQIEADRLRELEDQRISRMEHYQEDSASEAGS 331
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 145 HVSELATLFTEKLNELQTENTEQIHNYITNIFLEAGNSSTYIQNAFQLALPILQIGAV*K 324
HVS + ++ + + QTEN + N N++ EA + ++ + ++A ++ K
Sbjct: 62 HVSRVKSVDLDSWTDEQTENMTRWGNERANLYWEAKLAGGHVPSDSKIA-TFIKTKYEFK 120
Query: 325 QTVLYKE 345
+ VLY E
Sbjct: 121 KWVLYPE 127
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 240 KYIRDVIMYLLRILCLQFIQFLGEE---SRQLTDVFGQYRGH 124
+YI D + L + +Q+ GEE S Q+ +++ +Y GH
Sbjct: 46 QYIADEVNILRNLKHPNIVQYCGEELNRSAQVINLYMEYCGH 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,149
Number of Sequences: 5004
Number of extensions: 41951
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -