Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0794
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...    32   0.30 
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664...    28   5.0  
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669...    28   5.0  
04_03_0317 + 14292003-14292632                                         28   5.0  
04_03_0378 - 15125779-15126120,15126142-15126408                       28   6.5  
04_03_0377 - 15121777-15122406                                         28   6.5  
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590...    28   6.5  
07_03_0676 + 20618677-20618840,20618938-20619502                       27   8.7  

>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 55  KAGEMLLVKPRRSTADEA--DALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYI 228
           K  + LL +   S+A E+    L ++T+ + + VSE   +  EK  + +TEN  + HNYI
Sbjct: 237 KRRDQLLQEMNESSAAESLNSELAEVTSAI-ETVSEKIIMEEEKFKKWRTENIRRKHNYI 295

Query: 229 TNIF 240
             +F
Sbjct: 296 PFLF 299


>12_02_1113 -
           26165074-26165889,26166077-26166202,26166294-26166457,
           26166539-26166576,26166670-26166885,26166984-26167145,
           26167212-26167497,26167585-26167761,26167864-26167971,
           26168076-26168175,26168283-26168359,26168608-26168803,
           26169032-26169363,26169476-26169589,26169651-26169753
          Length = 1004

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 106 ADALTQMTAVLTKHVSELATLFTE--KLNELQTENTEQIHNYITNIFLEAGN 255
           ADA TQMT  + +HV++ A+L  E   L E  TE T++  +    +    GN
Sbjct: 295 ADA-TQMTTTIQQHVNQYASLECEFKDLKEKFTEETKERKDLYNKLIEVKGN 345


>04_03_0849 +
           20265511-20265984,20266452-20266617,20266694-20266905,
           20267154-20267647,20267732-20267780,20267922-20268251
          Length = 574

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 73  LVKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIF 240
           ++ P   +AD   AL      L+ H+ E   L   KLNE+    TE+      N F
Sbjct: 297 MLTPEDGSADLIRALNSRLIALSFHIREYYWLDKRKLNEIYRYKTEEYSYDAVNKF 352


>04_03_0317 + 14292003-14292632
          Length = 209

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 76  VKPRRSTADEADALTQMTAV--LTKHVSELATLFTEKLNELQTENTE 210
           VK +R   D    +T M ++  LTK VSE ATLF     E++ + T+
Sbjct: 6   VKLQRIVIDVKQRVTFMKSLKGLTKKVSEFATLFLMVYGEVEVQATK 52


>04_03_0378 - 15125779-15126120,15126142-15126408
          Length = 202

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 76  VKPRRSTADEADALTQMTAV--LTKHVSELATLFTEKLNELQTENTE 210
           VK +R   D    +T M ++  LTK VSE ATLF     E++ + T+
Sbjct: 6   VKLQRIVIDVKQRVTFMKSLKGLTKKVSEFATLFFMVYGEVEVQATK 52


>04_03_0377 - 15121777-15122406
          Length = 209

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 76  VKPRRSTADEADALTQMTAV--LTKHVSELATLFTEKLNELQTENTE 210
           VK +R   D    +T M ++  LTK VSE ATLF     E++ + T+
Sbjct: 6   VKLQRIVIDVKQRVTFMKSLKGLTKKVSEFATLFFMVYGEVEVQATK 52


>02_04_0071 +
           19457502-19458092,19458558-19458723,19458816-19459027,
           19460103-19460596,19460682-19460730,19460886-19461194
          Length = 606

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 73  LVKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIF 240
           ++ P   +AD   AL      L+ H+ E   +  +KLNE+    TE+      N F
Sbjct: 336 MLTPEDGSADLIRALNNRLIALSFHIREYYWVDMQKLNEIYRYKTEEYSYDAVNKF 391


>07_03_0676 + 20618677-20618840,20618938-20619502
          Length = 242

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 6   GREPGAGDGAVGGTVPQGRR-DAAGEAASLHGRR 104
           G + G GDGA G    + RR +AAG      GRR
Sbjct: 206 GGDAGGGDGAAGARSRRHRRLEAAGGVGERGGRR 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,322
Number of Sequences: 37544
Number of extensions: 268871
Number of successful extensions: 1134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)