Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0794
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 31 0.84
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 30 1.1
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 30 1.1
Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical p... 29 1.9
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 29 1.9
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 29 1.9
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 29 1.9
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 3.4
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 3.4
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 28 4.5
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 28 4.5
Z69386-1|CAA93430.1| 241|Caenorhabditis elegans Hypothetical pr... 27 7.8
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 422 KLP*QIRYKTIGIPIIFLFGYKSITPSL*STVCFYTAPICNIGSANWNAFWM 267
K P + + + I I+ F + P+ S CF T PICN+ + N+ W+
Sbjct: 10 KTPKKEEHPLVAIVILDAFDQR-FAPTHESYPCFGTIPICNVPAINFALSWL 60
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 192 QFIQFLGEESRQLTDVFGQYRGHLSE-GVSFVCRGATRLHQQ 70
+ ++ E+S +LT + G YR HL + G S +C + L+ Q
Sbjct: 294 EHVKIAQEQSNKLTKLIGTYRRHLQDMGDSHICEKHSLLYSQ 335
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 192 QFIQFLGEESRQLTDVFGQYRGHLSE-GVSFVCRGATRLHQQ 70
+ ++ E+S +LT + G YR HL + G S +C + L+ Q
Sbjct: 294 EHVKIAQEQSNKLTKLIGTYRRHLQDMGDSHICEKHSLLYSQ 335
>Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical
protein F53A2.8c protein.
Length = 674
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +1
Query: 76 VKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQI--HNYITNIFLEA 249
++PR D A + VL HV++L T +L EL+T+ +QI N TN+
Sbjct: 506 LQPRERLEDLTMAAMEHVGVLESHVAQLRT----RLAELKTQQNQQITSTNTPTNMVDSG 561
Query: 250 GNSSTYIQNAFQLALPILQIGA---V*KQTVLYKEGVMD 357
+S+T L+ P+ + + + ++ + GVMD
Sbjct: 562 MSSATDDLKNLSLSHPLDPLSSTLPILERATSQESGVMD 600
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +1
Query: 76 VKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQI--HNYITNIFLEA 249
++PR D A + VL HV++L T +L EL+T+ +QI N TN+
Sbjct: 614 LQPRERLEDLTMAAMEHVGVLESHVAQLRT----RLAELKTQQNQQITSTNTPTNMVDSG 669
Query: 250 GNSSTYIQNAFQLALPILQIGA---V*KQTVLYKEGVMD 357
+S+T L+ P+ + + + ++ + GVMD
Sbjct: 670 MSSATDDLKNLSLSHPLDPLSSTLPILERATSQESGVMD 708
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +1
Query: 76 VKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQI--HNYITNIFLEA 249
++PR D A + VL HV++L T +L EL+T+ +QI N TN+
Sbjct: 508 LQPRERLEDLTMAAMEHVGVLESHVAQLRT----RLAELKTQQNQQITSTNTPTNMVDSG 563
Query: 250 GNSSTYIQNAFQLALPILQIGA---V*KQTVLYKEGVMD 357
+S+T L+ P+ + + + ++ + GVMD
Sbjct: 564 MSSATDDLKNLSLSHPLDPLSSTLPILERATSQESGVMD 602
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +1
Query: 76 VKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQI--HNYITNIFLEA 249
++PR D A + VL HV++L T +L EL+T+ +QI N TN+
Sbjct: 614 LQPRERLEDLTMAAMEHVGVLESHVAQLRT----RLAELKTQQNQQITSTNTPTNMVDSG 669
Query: 250 GNSSTYIQNAFQLALPILQIGA---V*KQTVLYKEGVMD 357
+S+T L+ P+ + + + ++ + GVMD
Sbjct: 670 MSSATDDLKNLSLSHPLDPLSSTLPILERATSQESGVMD 708
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +1
Query: 76 VKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQI--HNYITNIFLEA 249
++PR D A + VL HV++L T +L EL+T+ +QI N TN+
Sbjct: 508 LQPRERLEDLTMAAMEHVGVLESHVAQLRT----RLAELKTQQNQQITSTNTPTNMVDSG 563
Query: 250 GNSSTYIQNAFQLALPILQIGA---V*KQTVLYKEGVMD 357
+S+T L+ P+ + + + ++ + GVMD
Sbjct: 564 MSSATDDLKNLSLSHPLDPLSSTLPILERATSQESGVMD 602
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 3 RGREPGAGDGAVGGTVPQGRRDAAGEAASLHGRRS*RPHSDDRGTDQ 143
+G + G G GAVG GR+ A G + G RP R + +
Sbjct: 714 KGGKKGRGAGAVGAAAAGGRKSAGGAGENPFGMDPMRPPMLQRSSSE 760
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 3 RGREPGAGDGAVGGTVPQGRRDAAGEAASLHGRRS*RPHSDDRGTDQ 143
+G + G G GAVG GR+ A G + G RP R + +
Sbjct: 714 KGGKKGRGAGAVGAAAAGGRKSAGGAGENPFGMDPMRPPMLQRSSSE 760
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 241 LEAGNSSTYIQNAFQLALPILQIGAV--*KQTVLYKEGVMDLY---PKRNIIGIPMVLYL 405
LE + Y+ + F+L LP +GA K+ V +G +D Y K +I+ P ++
Sbjct: 290 LEMQDRQPYLSHVFELTLPEQTLGATIGAKRRVHVMDGEVDTYYQLTKSSIVPTPCIVPR 349
Query: 406 ICYGSFISSL 435
Y F S L
Sbjct: 350 RSYRDFHSDL 359
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 241 LEAGNSSTYIQNAFQLALPILQIGAV--*KQTVLYKEGVMDLY---PKRNIIGIPMVLYL 405
LE + Y+ + F+L LP +GA K+ V +G +D Y K +I+ P ++
Sbjct: 290 LEMQDRQPYLSHVFELTLPEQTLGATIGAKRRVHVMDGEVDTYYQLTKSSIVPTPCIVPR 349
Query: 406 ICYGSFISSL 435
Y F S L
Sbjct: 350 RSYRDFHSDL 359
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 241 LEAGNSSTYIQNAFQLALPILQIGAV--*KQTVLYKEGVMDLY---PKRNIIGIPMVLYL 405
LE + Y+ + F+L LP +GA K+ V +G +D Y K +I+ P ++
Sbjct: 290 LEMQDRQPYLSHVFELTLPEQTLGATIGAKRRVHVMDGEVDTYYQLTKSSIVPTPCIVPR 349
Query: 406 ICYGSFISSL 435
Y F S L
Sbjct: 350 RSYRDFHSDL 359
>Z69386-1|CAA93430.1| 241|Caenorhabditis elegans Hypothetical
protein ZK596.1 protein.
Length = 241
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 136 LTKHVSELATLFTEKLNELQTENTEQIHNYIT-NIFLEA--GNSSTYIQNAFQ 285
++ V+E T EKLNE++ T I+N T LEA N S I+ FQ
Sbjct: 81 VSSQVTEFQTKVEEKLNEIKQNVTAVINNLSTVETQLEAIFANKSQTIREQFQ 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,619
Number of Sequences: 27780
Number of extensions: 236980
Number of successful extensions: 668
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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