Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0794
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.00 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.00 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.3  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 100 DEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYIT 231
           D    LT  +     H++E      +K  E+Q +N +++  + T
Sbjct: 51  DAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKLAEWFT 94


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 100 DEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYIT 231
           D    LT  +     H++E      +K  E+Q +N +++  + T
Sbjct: 51  DAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKLAEWFT 94


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 323 FYT-APICNIGSANWNAFWM*VELLPA 246
           F+T  P C I   +W +FW+  E  PA
Sbjct: 249 FHTYIPTCLIVIMSWVSFWIKPEAAPA 275


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 311 PICNIGSANWNAFWM*VELLPASKNIFV 228
           P C +   +W +FW+    +PA  ++ V
Sbjct: 251 PCCMLVIVSWVSFWLDQSAVPARVSLGV 278


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 311 PICNIGSANWNAFWM*VELLPASKNIFV 228
           P C +   +W +FW+    +PA  ++ V
Sbjct: 251 PCCMLVIVSWVSFWLDQSAVPARVSLGV 278


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 323 FYT-APICNIGSANWNAFWM*VELLPA 246
           F+T  P   I   +W AFW+  E +PA
Sbjct: 218 FHTYIPSALIVVMSWIAFWIKPEAIPA 244


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 342 RRCNGFIPEKEYN 380
           R C+  +P+KEYN
Sbjct: 29  RICDRSLPQKEYN 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,532
Number of Sequences: 438
Number of extensions: 3281
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)