Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0793
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 41 1e-04
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 32 0.069
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 28 0.85
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 1.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 2.0
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 27 2.6
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.5
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.0
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 25 6.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 7.9
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 41.1 bits (92), Expect = 1e-04
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Frame = +3
Query: 6 NAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAV--SLL--TASPLTKNLISKA 173
N G D + W +I FGGN N+ + G SAG+ + L+ T P +I +A
Sbjct: 164 NFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAGSYSALFQLIYETYHPEANQIIKRA 223
Query: 174 IIQS-GNALSSRAFQRDPLQSAKALARSLGCEAE-DVDEILEFLIATPAKDLVEADEKLN 347
++ S G ++ ++ + +Q LA+ G E E LE L A P +DL AD LN
Sbjct: 224 LLLSNGLSVQPKSVEESQIQ-FNELAQKFGIPLELSSAEKLEKLRAIPFQDL--ADNILN 280
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 31.9 bits (69), Expect = 0.069
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 75 NAGNLTIFGESAGAR--AVSLLTASPLTKNLISKAIIQSGNALSSRAFQRDPLQSAKA 242
N + I+G+ R +SL +P NL S +I S N L +FQ+DP A A
Sbjct: 351 NGTVVRIYGKDEAVRFTRLSLYQQAPKKSNLPSLDVIASNNPLVEESFQKDPTLFATA 408
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 28.3 bits (60), Expect = 0.85
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 21 DIVQAIRWVKDNIHHFGGN-AGNLTIFGESAGARAVSLLT 137
D + + +WV NI G N + G SAG VS+L+
Sbjct: 143 DAIDSFKWVASNIEKLGANPKRGFFLGGASAGGNFVSVLS 182
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 267 AEDVDEILEFLIATPAKDLVEADEKLNSLQKVLETSNNLFGLVIEKEFPGVEAVISEP 440
+E+V L+ L+ KD+ +E LN K+L + NL L+ EKE E+ + P
Sbjct: 248 SEEVVTTLKNLLEVKDKDVEGRNEALN---KILHPAKNLVELLTEKENLINESTLESP 302
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 400 SITSPNKLLLVSRTFCKEFNFSSASTKSLAGVAIKNSRI 284
++ PNK V+ + K+F FSS S A++NS++
Sbjct: 52 TLIQPNKSQSVTSPYVKQFTFSSKEYNSHNKHALQNSQL 90
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 532 QTFSRRGTLMR*FQTSIGMLAVLPDVSMLMKGSLITASTPG 410
Q F R +L F S +L +LP V+ + S+ TPG
Sbjct: 54 QEFQRGLSLFSVFSVSFSLLGLLPSVATTLPYSIGYTGTPG 94
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 493 QTSIGMLAVLPDVSML-MKGSLITASTPGNSFSITSPNKLLLVSRTFC 353
Q+ I +L+ +P +++L MK + + S N + + P KL L+ +C
Sbjct: 493 QSIIRLLSTMPRLTLLLMKTNDLVRSLDENLKTKSGPEKLYLIMARYC 540
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 135 TASPLTKNLISKAIIQSGNALSSRAFQRDPLQSAKALARSLGCEAEDVDE 284
T+ +TKNLI+ + ++SS DP A+ LG +D E
Sbjct: 16 TSISITKNLINSWLGNENTSVSSDEKNDDPPLQARPPRLGLGASRKDQSE 65
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 225 LQSAKALARSLGCEAED----VDEILEFLIATPAKDLVEADEKLNSLQKVLETSN 377
+ AK LAR G + +DE ++ LI+ + + ++NS+Q TSN
Sbjct: 80 IHGAKVLARISGANPQKLKAAIDEYIQPLISQISSTNASVETQVNSVQTTNTTSN 134
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 415 PGNSFSITSPNKLLLVSRTFCKEFNFSSAST 323
P S SI++P L S +NF +AST
Sbjct: 206 PSRSISISNPQSLSFPSSFDQSNYNFQAAST 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,109
Number of Sequences: 5004
Number of extensions: 42862
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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