Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0793
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886...    31   0.50 
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419...    30   1.1  
06_03_0365 + 19918003-19918401                                         29   3.5  
01_06_0753 - 31711300-31713066                                         29   3.5  
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749...    28   6.1  

>01_06_0036 +
           25786530-25786756,25788000-25788076,25788538-25788625,
           25788706-25788786,25788866-25788940,25789048-25789149,
           25789589-25789726,25791559-25791585,25791696-25791786,
           25792423-25792584
          Length = 355

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 15  IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAI 176
           + D  Q I +V +NI  +GG+   + + G+SAGA   +        K    ++I
Sbjct: 194 VSDASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIAACALIEQAVKESSGQSI 247


>06_03_1338 -
           29440373-29440534,29440993-29441083,29441799-29441942,
           29442094-29442159,29442589-29442729,29443077-29443178,
           29443264-29443338,29443469-29443549,29443670-29443739,
           29444063-29444139,29444392-29444660
          Length = 425

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 15  IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGA 116
           ++D  Q I +V +NI  +GG+   + + G+SAGA
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGA 235


>06_03_0365 + 19918003-19918401
          Length = 132

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 25/32 (78%), Gaps = 3/32 (9%)
 Frame = -3

Query: 178 IIALLIKFLVNGLAV---SNETARAPALSPNI 92
           ++A+L+  LV+ L+V   +++ ARAPAL+P++
Sbjct: 9   LVAVLLLLLVSSLSVRAEADQVARAPALAPDV 40


>01_06_0753 - 31711300-31713066
          Length = 588

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 134 QQRNRTRARAFTKYCQITGITTEVMDIIFHPSNGLNYIFD-TSIP 3
           Q+ N+ +    TKY  + G  T V + + + SNGL  + D T+IP
Sbjct: 535 QRLNKFQKLWLTKYSDLVGHLTRVAECMTYLSNGLQRLKDSTTIP 579


>07_01_0893 +
           7484598-7484744,7484837-7484902,7494387-7494530,
           7494860-7495235,7495904-7496017,7496282-7496454,
           7496562-7496669,7497311-7497377,7497791-7497904,
           7498121-7498257,7498727-7498813,7498962-7498986,
           7499044-7499266,7499770-7499947,7500039-7500152,
           7500249-7500380,7500488-7500588,7500720-7500933
          Length = 839

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
 Frame = +3

Query: 117 RAVSLLTASPLTKNLISKAIIQSGNALSSRAFQRDPLQSAKALARSLGCEAEDVDEI-LE 293
           RA  L +ASPL+   IS +   S +    +A ++ PL++ + ++     E  + D + +E
Sbjct: 306 RAKILHSASPLSVVSISPSKKNSSDQKIRKAVRKQPLKATQPISTQPDKEESNKDGLFVE 365

Query: 294 FLIATPAKDLVEADEKLNSLQKVLETSNNLFGLVIEKEFPGVEAV-ISEPFINILTSGRT 470
            +   PAK     +EK   +  VLE ++N F   ++ E  G   + I    I +    R 
Sbjct: 366 PICTIPAK----KEEK--QIDIVLENTSN-FRKQMKLEHTGTNIMDIEHSSIQVTQGERY 418

Query: 471 ANIP 482
            N P
Sbjct: 419 MNTP 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,279
Number of Sequences: 37544
Number of extensions: 250372
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)