Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0792
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   4.2  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   7.4  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   9.7  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -1

Query: 207  HPRNRTSTNEKFDTLLGCYSKR---IVYGHHTSMYCR*F*SYCRRLAPF 70
            HP   +  NE++D LLG    +     YG H S       SY  RL PF
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSS-AMIVCSYLIRLRPF 2031


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +3

Query: 516 VTAVRDNINLQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDEYE 662
           V+ +++ IN+ +   +L  P F +G   + +  ++ V  DE+  +  Y+
Sbjct: 38  VSHIKNAINVSLPTALLRRPSFDIGKVFACIKCNVKVSLDEINAIFLYD 86


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 198 NRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F 100
           N+ +T+E+F T LG  S  I+  +H S+  + F
Sbjct: 281 NKLATDEQFATSLGIDSSLILEVYHNSLQTKEF 313


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 495 KSEHYDMVTAVRDNINLQIEDHILEVPEFVLGGPVS 602
           +S+H ++  ++  + N   ++ IL VP+ +L    S
Sbjct: 180 QSQHVELTRSIARSFNSSYKEKILTVPDIILNSSSS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,439
Number of Sequences: 5004
Number of extensions: 54363
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)