Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0792
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371...    29   4.4  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    28   5.8  
12_01_0248 - 1841454-1841820,1842223-1842728                           28   7.6  

>08_01_0418 -
           3716226-3716279,3716531-3716581,3716656-3716751,
           3717037-3717194,3717303-3717417,3717511-3717564,
           3717843-3717950,3718494-3718583,3718818-3718856,
           3718993-3719172,3719264-3719576,3719659-3719834
          Length = 477

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 ECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQETLDHTYLPQPLSS-LDVSSKC 413
           E +A+  K +++  +VH  +EH+K K   + Q   D       LSS ++   KC
Sbjct: 344 EIMALDTKIIEWDGKVHEMEEHVKAKEKKKDQIVADENQKLAALSSEVEWKLKC 397


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 352 SCDW-FSPLTFKCSCALCTCHLNFRNFLIIAKHSQQTS 242
           S  W F P T   +C LCT  LN   FL+I++ S  T+
Sbjct: 294 SASWNFPPFTLFLNC-LCTFILNMSVFLVISRTSALTA 330


>12_01_0248 - 1841454-1841820,1842223-1842728
          Length = 290

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 180 RLLMFDFAGEAMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEH 320
           RLLM     +++ DSV D+   V + C    RKF    W ++ A  H
Sbjct: 137 RLLMTHIPSQSLPDSVADSGCKVVYLCRDPNRKFR--PWDINEAHRH 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,452
Number of Sequences: 37544
Number of extensions: 342613
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)