Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0786
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YZW7 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  
UniRef50_Q554D1 Cluster: Transmembrane protein; n=2; Dictyosteli...    35   2.4  
UniRef50_A6L8L2 Cluster: Putative outer membrane protein, probab...    34   3.2  
UniRef50_Q4XR86 Cluster: Putative uncharacterized protein; n=1; ...    33   9.7  

>UniRef50_Q4YZW7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 115

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 22/59 (37%), Positives = 32/59 (54%)
 Frame = +3

Query: 75  NYVF*TKIY*CISYSHFSVLYIF*INLRNLICKCTIFLWIYILHFFITNVMGIYVFTVF 251
           N+ F  KIY   +Y   S++YI+ I       K  I   IY L +FI ++ GIY+F +F
Sbjct: 57  NFSFANKIYKSSTYIWHSIIYIYIIISSFPTYKKYI---IYTLFYFIPSICGIYIFLLF 112


>UniRef50_Q554D1 Cluster: Transmembrane protein; n=2; Dictyostelium
           discoideum|Rep: Transmembrane protein - Dictyostelium
           discoideum AX4
          Length = 1686

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 15/39 (38%), Positives = 27/39 (69%)
 Frame = -3

Query: 173 FAYQISKINLKNVQYRKMAITNTLVNFSLKNVILSSFSM 57
           FA ++SK+N+ N   R + ITN+L++ S  +++LS  S+
Sbjct: 585 FAMELSKVNIFNTIIRNIGITNSLISSSDSDLVLSQSSI 623


>UniRef50_A6L8L2 Cluster: Putative outer membrane protein, probably
           involved in nutrient binding; n=1; Parabacteroides
           distasonis ATCC 8503|Rep: Putative outer membrane
           protein, probably involved in nutrient binding -
           Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
           / NCTC11152)
          Length = 1104

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +1

Query: 7   SERSHFPGQIRTENPVRIEKLERITFFKLKFTNVLVIAIFRYCTFFKL 150
           S +  +PG   TENPVRI K ER    K ++T   VI  F+  ++ KL
Sbjct: 506 SRKGDYPGAEDTENPVRILK-ERKNIDKNQYTLANVIGTFKITSWLKL 552


>UniRef50_Q4XR86 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 78

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +1

Query: 82  FFKLKFTNVLVIAIFRYCTFFKLILEI*YANVRYFCGFTFYIFLLQT*WVSTYLLSSEIY 261
           FF L  T++    I+  C FF LI  I + ++ +F  +  YIF+L    + T++     Y
Sbjct: 6   FFLLSLTSL----IYTVCYFFNLIACIFFPSLFFFFFYILYIFILIMRRIHTHIYYYTAY 61

Query: 262 ALAYSY 279
            L + Y
Sbjct: 62  MLLFIY 67


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,731,998
Number of Sequences: 1657284
Number of extensions: 10760744
Number of successful extensions: 19814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19809
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)