Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0786
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    26   4.9  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   6.5  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  

>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 84  KRNSFQFLYAYRVLGPYLSREMTSLGL 4
           +R S     AY+ LG ++ R +TSLGL
Sbjct: 192 RRTSNVLRQAYKKLGIFVERSLTSLGL 218


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 174 CTIFLWIYILHFFITNVMGIY 236
           C I LW  I HF I    G+Y
Sbjct: 125 CWICLWSMIFHFIIAIANGVY 145


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 120 HFSVLYIF*INLRNLICKCTIF 185
           H S  Y F +N+R L+C  TIF
Sbjct: 126 HTSFFYAF-LNIRTLVCGITIF 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,138
Number of Sequences: 5004
Number of extensions: 52690
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)