Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0786
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = +1

Query: 25  PGQIRTENPVRIEKLERITFFKLKFTNVLVIAIFRYCTFFKLILEI*YANVRYFCGFTF- 201
           PG+I + NP+ +     I   K      L   +     F  L   + ++N+  +    + 
Sbjct: 30  PGEINSINPINVYTKAYIYTIKSNMAKTLQFDVHMMLQFRYLDARLKFSNIAPYLNQIYG 89

Query: 202 YIFLLQT*WVSTYLLSSE 255
             F+    W  T  +S+E
Sbjct: 90  GQFVRDLIWTPTVYVSNE 107


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 400 SNEQKYN*ANVKISNRC-KVYLHASFL 477
           +N  KYN  N   +N C K+Y + +++
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 400 SNEQKYN*ANVKISNRC-KVYLHASFL 477
           +N  KYN  N   +N C K+Y + +++
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 400 SNEQKYN*ANVKISNRC-KVYLHASFL 477
           +N  KYN  N   +N C K+Y + +++
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 400 SNEQKYN*ANVKISNRC-KVYLHASFL 477
           +N  KYN  N   +N C K+Y + +++
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINYI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,806
Number of Sequences: 438
Number of extensions: 3756
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)