Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0784
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.79 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.4  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 17  Q*FYNN*HD-SSVNIRWFYL*CRDMLRTLR--NSDLRNNNFNKY 139
           Q F NN ++ + VN R       D++   R  NSD +NNN NK+
Sbjct: 553 QKFINNDYNFNEVNFRILGANVNDLIMNTRCANSDNQNNNQNKH 596


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 86  MLRTLRNSDLRNNNFNK 136
           ++ +L N+ + NNN+NK
Sbjct: 314 IISSLSNNTIHNNNYNK 330


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 104 NSDLRNNNFNKYIDDSETY 160
           N++  NNN+N Y  ++  Y
Sbjct: 93  NNNYNNNNYNNYNYNNNNY 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,621
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)